Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LARP7P2-201ENST00000575306 125 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 GLUD1P4-201ENST00000590914 418 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 BNIP3P24-201ENST00000593398 557 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AL031176.1-201ENST00000604554 466 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 U1.23-201ENST00000610293 146 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNU1-68P-201ENST00000615382 146 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 U1.39-201ENST00000621562 146 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC104985.3-201ENST00000623479 597 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC244258.1-201ENST00000637553 1071 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC091564.4-201ENST00000533934 2194 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 API5P2-201ENST00000397055 1498 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 OR4G11P-202ENST00000642116 1414 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS39Q96JC1 U3.11-201ENST00000364476 212 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS39Q96JC1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 Y_RNA.578-201ENST00000390903 88 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 RNA5SP44-201ENST00000410446 133 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 RNA5SP293-201ENST00000410527 113 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 RNA5SP229-201ENST00000410809 99 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 GTF2IP3-201ENST00000433887 494 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 MUPP-201ENST00000438111 566 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 ATP5C1P1-201ENST00000441945 895 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 MTCYBP42-201ENST00000444653 1130 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 RAC1P7-201ENST00000445367 377 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC125238.1-201ENST00000448842 249 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 USP9YP34-201ENST00000453983 808 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC091564.1-201ENST00000464563 479 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC021451.1-201ENST00000523498 1129 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 OR5AK1P-201ENST00000524837 922 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC006518.1-201ENST00000541449 943 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 MIR5708-201ENST00000579723 85 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 AL035411.2-201ENST00000604022 421 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 HSPE1P7-201ENST00000604681 321 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC024060.1-201ENST00000607052 494 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 CYCSP41-201ENST00000616920 296 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 AP000676.4-201ENST00000624659 623 ntBASIC3.29□□□□□ -1.88
VPS39Q96JC1 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS39Q96JC1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS39Q96JC1 AC004972.1-201ENST00000623934 2209 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC093010.3-201ENST00000570269 15214 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 RNU6-236P-201ENST00000363886 106 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 RNU6-707P-201ENST00000364647 95 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 RNU6-224P-201ENST00000384055 107 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 RNU6-925P-201ENST00000384629 104 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 RPS29P4-201ENST00000414733 161 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 MTND4P3-201ENST00000417829 541 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC115115.1-201ENST00000449927 248 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC104164.3-201ENST00000467363 1258 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 COX7A2P2-201ENST00000505291 250 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC119751.4-201ENST00000507498 357 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC010460.2-201ENST00000509054 677 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 CR383656.7-201ENST00000548164 174 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC013444.2-201ENST00000603317 787 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC011458.1-201ENST00000604034 617 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 NUTF2P8-201ENST00000604593 363 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC112220.2-201ENST00000605513 533 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC144521.1-201ENST00000607148 956 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 AP001521.1-201ENST00000609150 300 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC019176.2-201ENST00000611579 315 ntBASIC3.28□□□□□ -1.88
VPS39Q96JC1 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS39Q96JC1 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS39Q96JC1 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 RNA5SP119-201ENST00000362715 117 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 RNU5E-10P-201ENST00000363506 118 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 RNU2-47P-201ENST00000410649 186 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 RPL32P35-201ENST00000415214 394 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms