Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 Z83843.1-201ENST00000604070 3685 ntBASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF540Q8NDQ6 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 DYNLT3P1-201ENST00000378574 347 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MIR135A2-201ENST00000384854 100 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 RN7SKP220-201ENST00000410611 288 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MTATP6P27-201ENST00000416987 621 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 RPL7P10-201ENST00000417407 739 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AL645937.1-202ENST00000421799 937 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MTND2P9-201ENST00000422293 931 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 SEPT7P5-201ENST00000434048 306 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC010099.1-201ENST00000455434 375 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 RN7SL594P-201ENST00000470590 287 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 RPL7P49-201ENST00000471402 708 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 SETP14-201ENST00000497538 873 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC009901.1-201ENST00000506703 541 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC113420.1-201ENST00000507903 571 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 NBEAP1-201ENST00000554452 979 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 HSPE1P3-201ENST00000559254 309 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AL390838.2-201ENST00000602394 274 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC120053.1-201ENST00000607706 736 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AL161629.2-201ENST00000615347 275 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC002064.3-201ENST00000623448 346 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC068880.5-201ENST00000624331 290 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MTND5P7-201ENST00000413558 1798 ntBASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF540Q8NDQ6 AC008669.1-201ENST00000565823 2178 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 ZNF519P1-201ENST00000449011 1626 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 SNORA63.1-201ENST00000362493 131 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 SNORD56.3-201ENST00000363507 71 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 RNU5B-4P-201ENST00000363508 111 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 MIR218-2-201ENST00000385006 110 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 MIR34B-201ENST00000385076 84 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 SNORA11.1-201ENST00000408133 129 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 RPS29P4-201ENST00000414733 161 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 LUZP4P1-201ENST00000415420 344 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 HSFY7P-201ENST00000432672 318 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 OR2B8P-201ENST00000432841 938 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 HSPD1P21-201ENST00000436541 245 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 HSFY8P-201ENST00000437934 318 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 RPL39P6-201ENST00000448289 150 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 HSFY5P-201ENST00000453726 309 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 UBDP1-202ENST00000457888 382 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AP001992.1-205ENST00000462248 379 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 RPS15AP17-201ENST00000470598 390 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC023598.1-201ENST00000472521 361 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC008837.1-201ENST00000511513 412 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 HSPA8P13-201ENST00000523715 472 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 MTCO3P15-201ENST00000526563 574 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC010653.1-201ENST00000571108 881 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC020895.1-201ENST00000595362 272 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC078899.3-201ENST00000599065 212 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 MIR7851-201ENST00000610611 160 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 228.3 ms