Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIR3157-201ENST00000578688 85 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC026898.1-201ENST00000586404 571 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC107294.1-201ENST00000609524 467 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC006023.2-201ENST00000609916 167 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 PNPT1P2-201ENST00000456768 2050 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CLRN3Q8NCR9 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.21□□□□□ -1.73
CLRN3Q8NCR9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CLRN3Q8NCR9 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP502-201ENST00000362694 119 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RN7SKP44-201ENST00000363602 316 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 SNORA32.2-201ENST00000384049 122 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL645733.1-201ENST00000402250 217 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 PRELID1P1-201ENST00000403549 660 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RPS4XP9-201ENST00000405151 780 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP239-201ENST00000410218 129 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RPS12P24-201ENST00000412619 387 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 NDUFB4P7-201ENST00000423198 363 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RNU6-1208P-201ENST00000459588 107 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC018638.3-201ENST00000461273 132 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RPL21P104-201ENST00000464143 478 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RPS20P22-201ENST00000473700 357 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC073073.1-201ENST00000493920 463 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC074255.1-201ENST00000511259 501 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 Y_RNA.665-201ENST00000516177 98 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 SNORA74.1-201ENST00000516320 180 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 NARSP2-201ENST00000518524 679 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 BTF3P12-201ENST00000519620 469 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RN7SL230P-201ENST00000580835 303 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 VN1R80P-201ENST00000597126 338 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC092807.2-201ENST00000609367 243 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC009570.1-201ENST00000609599 745 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC244107.2-201ENST00000611773 76 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 uc_338.5-201ENST00000611839 155 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC005899.6-201ENST00000620729 297 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC140113.4-201ENST00000622087 222 ntBASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 DRG1-207ENST00000629688 309 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
CLRN3Q8NCR9 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 AL445487.1-201ENST00000415694 1580 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 AP004289.2-201ENST00000444413 1457 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 MTND4P35-201ENST00000604257 1375 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 Y_RNA.11-201ENST00000362375 109 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 RNU6-522P-201ENST00000364497 107 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP513-201ENST00000364648 118 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 Y_RNA.530-201ENST00000384587 101 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 MIR195-201ENST00000385194 87 ntBASIC4.2□□□□□ -1.74
CLRN3Q8NCR9 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms