Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC092954.2-201ENST00000609103 430 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC090517.2-201ENST00000614966 680 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL138721.1-201ENST00000616756 179 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RN7SL722P-201ENST00000617780 284 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RN7SL565P-201ENST00000618246 284 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 ZNF962P-201ENST00000443465 3140 ntBASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.9□□□□□ -1.78
CCDC28AQ8IWP9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 SNORA31-201ENST00000362607 130 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AL031985.1-201ENST00000392713 418 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 CALM2P3-201ENST00000400429 449 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AL133388.1-201ENST00000404509 287 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 RN7SKP293-201ENST00000411389 296 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 MTATP6P18-201ENST00000417994 673 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 MTCYBP5-201ENST00000423752 1135 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 RPL21P66-201ENST00000426566 466 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC017083.1-201ENST00000428093 483 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 USP12PX-201ENST00000432383 1057 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 SNRPGP6-201ENST00000451124 220 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC013267.1-201ENST00000458227 267 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC108860.1-201ENST00000484521 383 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 RPL32P9-201ENST00000487963 407 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP373-201ENST00000517271 95 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AP004242.1-201ENST00000533701 349 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 ARL2BPP2-201ENST00000550907 489 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 OR4H12P-201ENST00000556269 907 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 MIR1273E-201ENST00000581165 102 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC105254.2-201ENST00000603636 436 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AC017083.3-201ENST00000609955 700 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 USP8P1-201ENST00000494673 3183 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 RPS4XP5-202ENST00000449995 1334 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 AL136164.3-201ENST00000624429 3978 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 ELF2P3-201ENST00000445099 1506 ntBASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CCDC28AQ8IWP9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC00622-201ENST00000562811 1570 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.159-201ENST00000363674 87 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-39P-201ENST00000384344 107 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.554-201ENST00000384672 102 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 MIR558-201ENST00000384920 94 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL359634.1-202ENST00000404721 284 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL590002.1-201ENST00000406554 418 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RNU2-36P-201ENST00000410361 191 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RN7SKP167-201ENST00000411047 285 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 OR2AS1P-201ENST00000427827 319 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 MED13P1-201ENST00000428342 171 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 SUMO2P3-201ENST00000438311 288 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 Z99127.3-201ENST00000448158 395 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL691482.1-201ENST00000453255 87 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 ANP32BP2-201ENST00000454525 545 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RPS17P2-201ENST00000461663 408 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL672167.3-201ENST00000465951 960 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC010631.1-201ENST00000474150 156 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RN7SL808P-201ENST00000496066 299 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 RN7SL466P-201ENST00000497546 295 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC019235.1-201ENST00000503847 207 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 GAPDHP56-201ENST00000506031 988 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 620.4 ms