Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 RPS29P7-201ENST00000439662 171 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC093155.1-201ENST00000440164 826 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 XKRY2-201ENST00000442362 1093 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC055731.1-201ENST00000474387 401 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC034222.1-201ENST00000494052 532 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 ARL6IP1P1-201ENST00000545836 610 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 SETP7-201ENST00000552169 453 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC010928.2-201ENST00000588017 287 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC012254.4-201ENST00000588843 273 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AL109918.3-201ENST00000603072 338 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC103881.1-201ENST00000603476 538 ntBASIC1.27□□□□□ -2.21
LINC00643Q86TS7 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
LINC00643Q86TS7 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AL022578.1-201ENST00000439330 1433 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC004520.1-201ENST00000608362 1413 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC104446.1-201ENST00000613728 1321 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 SNORA68.1-201ENST00000364537 132 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 RNU6-317P-201ENST00000384031 107 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 SNORA5A-201ENST00000384111 134 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 U3.19-201ENST00000390893 196 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AL359511.1-201ENST00000402970 211 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 VN1R51P-201ENST00000411675 945 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 RSL24D1P6-201ENST00000426934 401 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 CYCSP42-201ENST00000450823 238 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 CDC42P1-201ENST00000456658 548 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 NAP1L1P3-201ENST00000462291 880 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC026427.2-201ENST00000506228 536 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 RN7SKP24-201ENST00000515888 284 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 RGS4-207ENST00000527809 817 ntTSL 4 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 FAM92A1P1-201ENST00000528023 890 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC074029.2-201ENST00000551045 634 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC107954.1-201ENST00000565906 727 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 MIR4287-201ENST00000579398 78 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 MIR3616-201ENST00000584070 92 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AL158801.5-201ENST00000623123 465 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 AC131280.1-202ENST00000624067 4211 ntBASIC1.26□□□□□ -2.21
LINC00643Q86TS7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00643Q86TS7 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MTCO1P4-201ENST00000520516 1409 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MIR192-201ENST00000384915 110 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 FCF1P1-201ENST00000432690 571 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AL590762.3-201ENST00000436372 640 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 ANKRD30BP3-201ENST00000444850 1070 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 FPGT-203ENST00000467578 601 ntTSL 2 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC104685.1-201ENST00000502445 371 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 RNA5SP200-201ENST00000516360 103 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 RNA5SP24-201ENST00000516478 95 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AP001804.3-201ENST00000525146 880 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC007229.1-201ENST00000590455 412 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AL606834.2-201ENST00000602954 668 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AL450336.1-201ENST00000605180 586 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 MIR6716-201ENST00000613413 80 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AL161629.2-201ENST00000615347 275 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC005296.1-201ENST00000616145 209 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 CR848007.1-201ENST00000442354 1699 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00643Q86TS7 SGO1P2-201ENST00000429458 1589 ntBASIC1.25□□□□□ -2.21
LINC00643Q86TS7 ZNF285B-201ENST00000561698 1767 ntBASIC1.24□□□□□ -2.21
LINC00643Q86TS7 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms