Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 VN1R31P-201ENST00000417498 730 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC234782.4-201ENST00000417646 1048 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC012360.2-201ENST00000609349 391 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL7A1Q02388 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL7A1Q02388 HMGB1P11-201ENST00000413899 637 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AL590762.3-201ENST00000436372 640 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 RPS7P5-201ENST00000441482 581 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC034244.1-201ENST00000507687 207 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 HMGB1P1-201ENST00000522557 636 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AC006116.7-201ENST00000590141 756 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 AL359198.2-201ENST00000611836 194 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 RPL23AP61-201ENST00000623642 466 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.44□□□□□ -2.18
COL7A1Q02388 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
COL7A1Q02388 ERHP2-201ENST00000402323 299 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.43□□□□□ -2.18
COL7A1Q02388 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.43□□□□□ -2.18
COL7A1Q02388 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC1.43□□□□□ -2.18
COL7A1Q02388 RNU6-250P-201ENST00000516958 103 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
COL7A1Q02388 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL7A1Q02388 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC1.43□□□□□ -2.18
COL7A1Q02388 AC005951.1-201ENST00000576706 485 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.43□□□□□ -2.18
COL7A1Q02388 AC066616.2-201ENST00000559334 1481 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC1.43□□□□□ -2.18
COL7A1Q02388 MTND4P35-201ENST00000604257 1375 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 Y_RNA.36-201ENST00000362602 112 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AL021407.1-201ENST00000404531 386 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RPS7P2-201ENST00000435134 607 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RPS4XP11-201ENST00000446897 772 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RPL23AP63-201ENST00000498752 471 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RPS27P27-201ENST00000498779 255 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AC025281.1-201ENST00000567026 265 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.43□□□□□ -2.18
COL7A1Q02388 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AL355578.1-201ENST00000607405 1328 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.43□□□□□ -2.18
COL7A1Q02388 NDUFB4P5-201ENST00000415445 361 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 NAMPTP2-201ENST00000505629 1115 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 CBX3P5-201ENST00000552017 521 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AL389895.1-201ENST00000554127 252 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 MIR8081-201ENST00000611533 95 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 AC022709.1-201ENST00000615967 87 ntBASIC1.43□□□□□ -2.18
COL7A1Q02388 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
COL7A1Q02388 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
COL7A1Q02388 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.42□□□□□ -2.18
COL7A1Q02388 RNU2-6P-201ENST00000411404 190 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AC104332.2-201ENST00000429959 156 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.42□□□□□ -2.18
COL7A1Q02388 HMGB1P31-201ENST00000437242 427 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC092473.1-201ENST00000441098 221 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 SNORA70.14-201ENST00000516205 110 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AC068339.2-201ENST00000534395 618 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC005730.3-201ENST00000583067 366 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC002076.2-201ENST00000617362 122 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
COL7A1Q02388 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.42□□□□□ -2.18
COL7A1Q02388 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC093151.1-201ENST00000427711 313 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC1.42□□□□□ -2.18
COL7A1Q02388 PPP1R2P5-201ENST00000457256 603 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 TTC39CP1-201ENST00000512513 755 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AC006254.3-201ENST00000603353 884 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AC096720.1-201ENST00000604441 183 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 HMGN2P28-201ENST00000606102 262 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.42□□□□□ -2.18
COL7A1Q02388 AF127577.6-201ENST00000623352 2191 ntBASIC1.42□□□□□ -2.18
COL7A1Q02388 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
COL7A1Q02388 CDC27P2-201ENST00000425026 1922 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
COL7A1Q02388 AC233981.2-201ENST00000611524 1614 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 U8.8-201ENST00000365399 135 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 RNU1-57P-201ENST00000384491 166 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 RNU4-74P-201ENST00000411280 161 ntBASIC1.41□□□□□ -2.18
COL7A1Q02388 RPS6P12-201ENST00000432491 726 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms