Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
FOXA3P55318 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA3P55318 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
FOXA3P55318 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA3P55318 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
FOXA3P55318 RNU6-1249P-201ENST00000363237 111 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 RNVU1-14-201ENST00000384770 164 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 SSXP10-201ENST00000402595 565 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 DHFRP5-201ENST00000406944 564 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA3P55318 AL356320.2-201ENST00000417263 507 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 TMEM167AP1-201ENST00000423409 219 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXA3P55318 AC098826.1-201ENST00000433943 471 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA3P55318 PRSS3P4-201ENST00000453323 162 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 NAP1L1P3-201ENST00000462291 880 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA3P55318 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 SNORA67.7-201ENST00000516664 135 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.86□□□□□ -2.11
FOXA3P55318 AC087272.1-201ENST00000523624 533 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AP003102.1-201ENST00000525638 661 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 OR5AK3P-201ENST00000527486 1297 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA3P55318 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXA3P55318 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA3P55318 AL049874.4-201ENST00000557593 255 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AL355812.1-201ENST00000603215 216 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 HSPE1P7-201ENST00000604681 321 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AC079597.1-201ENST00000624306 508 ntBASIC1.86□□□□□ -2.11
FOXA3P55318 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA3P55318 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA3P55318 MIR422A-201ENST00000362286 90 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 SNORA38.1-201ENST00000364172 131 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 RNA5SP72-201ENST00000364442 117 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA3P55318 RNU6-761P-201ENST00000384148 107 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXA3P55318 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXA3P55318 EEF1A1P41-201ENST00000414667 207 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA3P55318 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA3P55318 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA3P55318 RPL36P19-201ENST00000430744 301 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA3P55318 RNF2P1-201ENST00000442955 1010 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 RPL23AP15-201ENST00000450202 459 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA3P55318 OR5H5P-201ENST00000503164 928 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC010374.2-201ENST00000512933 535 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC112673.1-201ENST00000513168 575 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC243972.3-201ENST00000539655 198 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC092470.1-201ENST00000546187 132 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 CCNG2P1-201ENST00000549521 1000 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC079600.2-201ENST00000550076 130 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AL442163.2-201ENST00000553912 710 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA3P55318 AMZ2P1-203ENST00000565833 850 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 MIR5694-201ENST00000581190 76 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 NRBF2P5-201ENST00000603087 788 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 AC012314.7-201ENST00000619693 93 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 U4.3-201ENST00000621047 82 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA3P55318 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA3P55318 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA3P55318 AC087359.1-201ENST00000508335 1740 ntBASIC1.85□□□□□ -2.11
FOXA3P55318 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA3P55318 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA3P55318 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
FOXA3P55318 MIR21-201ENST00000362134 72 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.84□□□□□ -2.11
FOXA3P55318 MIR7-3-201ENST00000384898 110 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 ATP5F1P3-201ENST00000397213 657 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC010385.1-201ENST00000412374 256 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA3P55318 FNDC3CP-201ENST00000420795 1155 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA3P55318 AL121871.1-201ENST00000443413 436 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 SNRPGP6-201ENST00000451124 220 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA3P55318 AL359385.1-201ENST00000456509 365 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA3P55318 SNORA84-201ENST00000459229 133 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.84□□□□□ -2.11
FOXA3P55318 PCNAP1-201ENST00000505363 709 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA3P55318 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA3P55318 PRELID3BP4-201ENST00000515476 571 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA3P55318 AC005412.1-201ENST00000580812 1049 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC090312.2-201ENST00000582687 378 ntBASIC1.84□□□□□ -2.11
FOXA3P55318 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA3P55318 AL035413.2-201ENST00000604801 525 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms