Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HIGD1AP6-201ENST00000521833 279 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AP000889.1-201ENST00000530968 660 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 ADAM3B-201ENST00000569937 840 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC012254.4-201ENST00000588843 273 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC021851.1-201ENST00000608537 1082 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 MTND2P41-201ENST00000637599 773 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 MTND5P31-201ENST00000419366 1374 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC009501.3-201ENST00000605001 1352 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC007342.9-201ENST00000623877 1385 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HLA-DMBP28068 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 RNU6-851P-201ENST00000384565 107 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 RNU6-821P-201ENST00000390995 107 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC244453.4-201ENST00000419150 388 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 PAICSP7-201ENST00000419829 962 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC004022.1-201ENST00000447766 1066 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 DNAJC19P8-201ENST00000452887 259 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AP000705.1-201ENST00000454567 350 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 RN7SL297P-201ENST00000483161 293 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC025881.1-201ENST00000518851 512 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC004217.3-201ENST00000551552 878 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC090666.1-201ENST00000578241 445 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC245036.5-201ENST00000596330 847 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 RPL12P50-201ENST00000603116 116 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC025588.3-201ENST00000604182 274 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC016542.1-201ENST00000608259 493 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 AL138880.2-201ENST00000616214 239 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 MIR6076-201ENST00000617521 113 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.1□□□□□ -2.07
HLA-DMBP28068 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HLA-DMBP28068 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HLA-DMBP28068 SNORD115-48-201ENST00000364764 76 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 SNORA18.3-201ENST00000384122 132 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 MTND4LP20-201ENST00000402379 270 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 FO393413.1-201ENST00000402892 195 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC099677.1-201ENST00000420575 175 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 RPS6P14-201ENST00000425165 719 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 RPL23AP74-201ENST00000437246 471 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AL513043.1-201ENST00000439124 535 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 ANKRD30BP3-201ENST00000444850 1070 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC104073.1-201ENST00000451988 151 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 RNA5SP310-201ENST00000459084 116 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC015908.1-201ENST00000478739 476 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC119751.5-201ENST00000514077 770 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 SNORA9.3-201ENST00000516383 129 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 RNA5SP367-201ENST00000516557 118 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 SNRPGP16-201ENST00000533275 226 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 OR8K4P-201ENST00000534608 872 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 BX322635.1-201ENST00000605804 496 ntBASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HLA-DMBP28068 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.08
HLA-DMBP28068 CUL1P1-201ENST00000509510 2425 ntBASIC2.09□□□□□ -2.08
HLA-DMBP28068 MTCO1P18-201ENST00000455518 1419 ntBASIC2.08□□□□□ -2.08
HLA-DMBP28068 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.08□□□□□ -2.08
HLA-DMBP28068 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HLA-DMBP28068 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HLA-DMBP28068 RNU6-1027P-201ENST00000383998 107 ntBASIC2.08□□□□□ -2.08
HLA-DMBP28068 MIR592-201ENST00000384959 97 ntBASIC2.08□□□□□ -2.08
HLA-DMBP28068 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms