Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR765-201ENST00000390226 114 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL8A1P27658 Y_RNA.580-201ENST00000391004 95 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RNU6-918P-201ENST00000391219 106 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RPS4XP7-201ENST00000406274 780 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RNA5SP107-201ENST00000411358 122 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 CBX1P3-201ENST00000413296 527 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 MTND3P9-201ENST00000429526 346 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AC091390.1-201ENST00000433904 331 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AC006466.1-201ENST00000438721 289 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 AC005094.1-201ENST00000440420 368 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.18□□□□□ -1.58
COL8A1P27658 RPS18P6-201ENST00000476880 458 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RN7SL97P-201ENST00000486780 299 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AC007686.1-201ENST00000488511 463 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RPS17P5-201ENST00000498293 408 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 AP004607.2-201ENST00000533949 322 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.18□□□□□ -1.58
COL8A1P27658 uc_338.18-201ENST00000615451 175 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 AP000346.3-201ENST00000622821 210 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.18□□□□□ -1.58
COL8A1P27658 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL8A1P27658 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL8A1P27658 AC074141.1-201ENST00000588129 2995 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 AL109809.4-201ENST00000603520 2185 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 RNU6-790P-201ENST00000384479 105 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.17□□□□□ -1.58
COL8A1P27658 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.17□□□□□ -1.58
COL8A1P27658 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 AC009963.2-201ENST00000453431 138 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 RN7SL222P-201ENST00000476452 299 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC098583.1-201ENST00000480875 255 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC114728.1-201ENST00000488289 483 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.17□□□□□ -1.58
COL8A1P27658 SNORA58-201ENST00000505219 137 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC074250.1-201ENST00000511117 192 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 RNU6-798P-201ENST00000516912 103 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 Y_RNA.719-201ENST00000517156 106 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.17□□□□□ -1.58
COL8A1P27658 IGBP1P1-201ENST00000554337 1009 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC009120.3-201ENST00000563335 499 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.17□□□□□ -1.58
COL8A1P27658 MIR4646-201ENST00000580775 63 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.17□□□□□ -1.58
COL8A1P27658 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.17□□□□□ -1.58
COL8A1P27658 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL8A1P27658 AL121768.1-201ENST00000613917 2544 ntBASIC5.17□□□□□ -1.58
COL8A1P27658 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
COL8A1P27658 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL8A1P27658 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.16□□□□□ -1.58
COL8A1P27658 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.16□□□□□ -1.58
COL8A1P27658 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 AC062022.1-201ENST00000451026 1684 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms