Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.62□□□□□ -1.83
MSH3P20585 RNA5SP216-201ENST00000516111 123 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RNU6-150P-201ENST00000516237 95 ntBASIC3.62□□□□□ -1.83
MSH3P20585 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AC007991.1-201ENST00000522680 631 ntBASIC3.62□□□□□ -1.83
MSH3P20585 HSPA8P13-201ENST00000523715 472 ntBASIC3.62□□□□□ -1.83
MSH3P20585 OR4A45P-201ENST00000529954 901 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.62□□□□□ -1.83
MSH3P20585 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 CR392039.5-201ENST00000623201 510 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AL356266.1-201ENST00000623311 483 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AL356596.1-201ENST00000624230 379 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AC034229.5-201ENST00000624258 185 ntBASIC3.62□□□□□ -1.83
MSH3P20585 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH3P20585 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH3P20585 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH3P20585 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
MSH3P20585 RNU4-21P-201ENST00000362802 126 ntBASIC3.61□□□□□ -1.83
MSH3P20585 SNORA62.3-201ENST00000365110 153 ntBASIC3.61□□□□□ -1.83
MSH3P20585 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
MSH3P20585 RPL21P17-201ENST00000397467 475 ntBASIC3.61□□□□□ -1.83
MSH3P20585 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
MSH3P20585 AL121972.1-201ENST00000402023 252 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AL024474.1-201ENST00000404655 591 ntBASIC3.61□□□□□ -1.83
MSH3P20585 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 RPL30P2-201ENST00000414021 291 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC009237.5-201ENST00000414271 501 ntBASIC3.61□□□□□ -1.83
MSH3P20585 RPL7P30-201ENST00000420888 709 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC245054.1-201ENST00000420944 258 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AL049610.1-201ENST00000423374 372 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC018644.1-201ENST00000429934 551 ntBASIC3.61□□□□□ -1.83
MSH3P20585 MED14P1-201ENST00000430517 648 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC010153.1-201ENST00000432862 727 ntBASIC3.61□□□□□ -1.83
MSH3P20585 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 NDUFB1P1-201ENST00000435191 180 ntBASIC3.61□□□□□ -1.83
MSH3P20585 LARP1BP3-201ENST00000437229 869 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AL117351.1-201ENST00000438864 766 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 MTND1P30-201ENST00000441241 901 ntBASIC3.61□□□□□ -1.83
MSH3P20585 MTCO2P18-201ENST00000457151 658 ntBASIC3.61□□□□□ -1.83
MSH3P20585 RNU7-136P-201ENST00000458819 69 ntBASIC3.61□□□□□ -1.83
MSH3P20585 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.61□□□□□ -1.83
MSH3P20585 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH3P20585 PAICSP4-201ENST00000517543 1253 ntBASIC3.61□□□□□ -1.83
MSH3P20585 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AC092470.1-201ENST00000546187 132 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC007115.1-201ENST00000546853 234 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AC034105.4-201ENST00000568304 277 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AC008507.1-201ENST00000587506 734 ntBASIC3.61□□□□□ -1.83
MSH3P20585 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.61□□□□□ -1.83
MSH3P20585 AC092354.1-201ENST00000606057 376 ntBASIC3.61□□□□□ -1.83
MSH3P20585 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 AL158063.1-201ENST00000615349 536 ntBASIC3.61□□□□□ -1.83
MSH3P20585 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH3P20585 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH3P20585 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH3P20585 ZNF285B-201ENST00000561698 1767 ntBASIC3.61□□□□□ -1.83
MSH3P20585 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH3P20585 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 PRO1804-201ENST00000623780 2050 ntBASIC3.6□□□□□ -1.83
MSH3P20585 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
MSH3P20585 RNU4-24P-201ENST00000364565 139 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RNA5SP51-201ENST00000364750 119 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RNA5SP167-201ENST00000365461 116 ntBASIC3.6□□□□□ -1.83
MSH3P20585 Y_RNA.436-201ENST00000384097 102 ntBASIC3.6□□□□□ -1.83
MSH3P20585 DHFRP6-201ENST00000401776 268 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AC127526.1-201ENST00000417526 366 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AC083875.1-201ENST00000419509 405 ntBASIC3.6□□□□□ -1.83
MSH3P20585 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH3P20585 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 RPL23AP74-201ENST00000437246 471 ntBASIC3.6□□□□□ -1.83
MSH3P20585 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 TRIM60P18-201ENST00000441518 828 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AL360221.1-201ENST00000445989 335 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AL590399.6-201ENST00000446396 307 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AL133547.1-201ENST00000448546 220 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms