Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC009812.4-201ENST00000569134 1805 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 LINC01355-201ENST00000566551 5444 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC018529.3-201ENST00000624212 2254 ntBASIC6.02□□□□□ -1.44
CCDC9Q9Y3X0 AL022322.2-201ENST00000624072 20397 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC104623.2-202ENST00000623477 4002 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RNU5A-6P-201ENST00000384136 116 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL136372.1-201ENST00000403060 228 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-195P-201ENST00000411352 109 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 PPP1R11P2-201ENST00000423543 382 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC137499.1-201ENST00000427602 88 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC005008.1-201ENST00000456151 612 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RPL36AP13-201ENST00000457490 317 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 VN1R105P-201ENST00000486595 910 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-430P-201ENST00000517078 107 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 ERHP1-201ENST00000523006 310 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 NTS-203ENST00000551529 801 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 MIR4472-2-201ENST00000582069 67 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC053481.4-201ENST00000583164 216 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL451064.1-201ENST00000607718 471 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL161734.1-201ENST00000609720 557 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC006023.2-201ENST00000609916 167 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC099842.1-201ENST00000619919 596 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 CR392039.5-201ENST00000623201 510 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AC084035.1-201ENST00000634543 607 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 AL158163.1-201ENST00000603915 1649 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 NXPH1-205ENST00000602349 1953 ntBASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
CCDC9Q9Y3X0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC008549.2-201ENST00000333482 706 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 RNU5E-1-201ENST00000362477 120 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-76P-201ENST00000384060 104 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 SDHCP2-201ENST00000398565 501 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 RNU2-66P-201ENST00000410650 161 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 E2F6P2-201ENST00000420708 748 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 TRIM60P10Y-201ENST00000425589 751 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 MTATP6P4-201ENST00000427725 675 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 TRIM60P8Y-201ENST00000436338 762 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 MTCO2P29-201ENST00000465212 189 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 CREM-226ENST00000469949 721 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC108860.1-201ENST00000484521 383 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC138853.1-201ENST00000503549 823 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 LAMTOR3P2-201ENST00000504479 232 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 FTH1P9-201ENST00000513251 355 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-840P-201ENST00000517275 65 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC008489.1-201ENST00000524271 483 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AL353600.1-201ENST00000608148 251 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC006338.1-201ENST00000618453 749 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AL732618.1-201ENST00000623251 301 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC006065.6-201ENST00000625201 545 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 AC138915.3-201ENST00000562908 1389 ntBASIC6.01□□□□□ -1.45
CCDC9Q9Y3X0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC012020.1-201ENST00000624541 1728 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms