Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC092447.10-201ENST00000620607 1652 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS28Q9UK41 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC002546.1-201ENST00000588041 2504 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS28Q9UK41 MTCO1P9-201ENST00000505577 1534 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS28Q9UK41 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS28Q9UK41 OTUD4P1-201ENST00000237841 3067 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 RNA5SP124-201ENST00000362739 110 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 RNU6-777P-201ENST00000364265 104 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 RNU6-744P-201ENST00000365557 107 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 RNU6-1316P-201ENST00000384242 108 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 RNU6-1207P-201ENST00000384343 107 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 PTMAP2-201ENST00000397627 327 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 HLFP1-201ENST00000402375 499 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL356421.1-201ENST00000403255 413 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 MIR320C1-201ENST00000408566 88 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS28Q9UK41 YPEL5P1-201ENST00000419731 367 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL022400.1-201ENST00000423946 935 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 SKP1P1-201ENST00000438081 489 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL354941.1-201ENST00000438600 464 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL109741.2-201ENST00000455561 343 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 HMGB1P36-201ENST00000487709 576 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC093809.1-201ENST00000509155 340 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC022483.1-201ENST00000514020 567 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AP003461.1-201ENST00000528866 78 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC023538.1-201ENST00000534576 736 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 MIR5187-201ENST00000583479 76 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC006539.2-201ENST00000601729 572 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC013444.2-201ENST00000603317 787 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 SNORA62.6-201ENST00000606322 83 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL110115.1-201ENST00000614396 364 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AL607023.1-201ENST00000620045 248 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC039056.2-201ENST00000622261 511 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 AC009039.2-201ENST00000624524 529 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 ZNF542P-204ENST00000482727 1305 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS28Q9UK41 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS28Q9UK41 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.85□□□□□ -1.79
VPS28Q9UK41 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.85□□□□□ -1.79
VPS28Q9UK41 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 CR381670.1-201ENST00000624291 1693 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 RNA5SP295-201ENST00000362655 121 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 SNORA48.7-201ENST00000391302 135 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 RPL21P32-201ENST00000419877 477 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC010099.3-201ENST00000423896 409 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC017083.1-201ENST00000428093 483 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 MTCO1P27-201ENST00000448269 226 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 DNAJC19P1-201ENST00000455312 319 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 CFTRP1-201ENST00000456646 183 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 SNORD121B-201ENST00000458838 81 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 RPL7P15-201ENST00000461190 712 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC007537.2-201ENST00000472093 511 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AP001025.2-201ENST00000490908 477 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 VN1R104P-201ENST00000505115 1009 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms