Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC084757.4-201ENST00000616350 526 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AL356585.4-201ENST00000623078 1229 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC116618.1-201ENST00000634617 774 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 RNA5SP387-201ENST00000364226 106 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 RNU6-1074P-201ENST00000383995 104 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 TAF9BP1-201ENST00000396646 746 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 SNORA3.3-201ENST00000408712 125 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 RNA5SP107-201ENST00000411358 122 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 SSR1P2-201ENST00000415208 787 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 ELOCP9-201ENST00000418624 239 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 COX7BP2-201ENST00000437976 242 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 ARPC3P5-201ENST00000448802 534 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC097493.1-201ENST00000463958 372 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 RPS4XP10-201ENST00000465034 731 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC006483.1-201ENST00000487308 313 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC114967.1-201ENST00000504890 259 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 FABP5P12-201ENST00000515543 389 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 RNU6-311P-201ENST00000516224 102 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 SCARNA14-201ENST00000516903 136 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 TRMT10BP1-201ENST00000519377 943 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 MTND4P33-201ENST00000556706 766 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC091046.2-201ENST00000620775 665 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AL360181.4-201ENST00000621752 134 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC068787.1-201ENST00000623908 691 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX28Q9NUL7 AC004972.1-201ENST00000623934 2209 ntBASIC3.28□□□□□ -1.88
DDX28Q9NUL7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
DDX28Q9NUL7 MTND5P24-201ENST00000438892 1767 ntBASIC3.28□□□□□ -1.89
DDX28Q9NUL7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
DDX28Q9NUL7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 MIR30E-201ENST00000362104 92 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 Y_RNA.333-201ENST00000365274 102 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 SAR1AP2-201ENST00000392696 594 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 SOD2P1-201ENST00000396543 562 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 MIR1284-201ENST00000408337 120 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RNA5SP129-201ENST00000410276 118 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RNA5SP293-201ENST00000410527 113 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL592310.1-201ENST00000414330 671 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 TPMTP2-201ENST00000414372 726 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 HMGB3P23-201ENST00000414981 585 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RPL21P40-201ENST00000428586 483 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RPL23AP83-201ENST00000434984 473 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 NDUFB1P1-201ENST00000435191 180 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 Z82190.1-201ENST00000454534 490 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC099563.1-201ENST00000456086 418 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 USP9YP25-201ENST00000457708 443 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RPL21P8-201ENST00000465083 535 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 HMGN2P13-201ENST00000476476 274 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 ACTR3P3-201ENST00000480448 893 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RN7SL323P-201ENST00000494712 295 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 FCF1P3-201ENST00000496394 590 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RNU6-352P-201ENST00000516908 107 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC022695.1-201ENST00000522089 237 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 DEFB131D-201ENST00000526803 184 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 MTCO3P24-201ENST00000572729 782 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL163642.2-201ENST00000604722 1019 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL450336.1-201ENST00000605180 586 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC004832.5-201ENST00000608677 401 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC107294.3-201ENST00000609211 526 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC006386.1-201ENST00000619436 415 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC015967.1-201ENST00000619893 476 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AL590240.3-201ENST00000621416 943 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms