Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 MIR96-201ENST00000362288 78 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AL627390.1-201ENST00000396055 340 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 RPL23AP39-201ENST00000415533 405 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 PSMA3P-201ENST00000555485 635 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC069234.5-201ENST00000611056 416 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 RPL23AP61-201ENST00000623642 466 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 GSTA12P-201ENST00000402398 508 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 RPL7P37-201ENST00000425095 738 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 SNRPFP4-201ENST00000456366 242 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 U8.8-201ENST00000365399 135 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 ERHP2-201ENST00000402323 299 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 MTCO3P31-201ENST00000405526 789 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS13AQ96RL7 LRRC77P-213ENST00000637727 880 ntBASIC1.92□□□□□ -2.1
VPS13AQ96RL7 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC009969.1-201ENST00000438726 172 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 CBWD4P-201ENST00000445695 655 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 HMGB1P1-201ENST00000522557 636 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AL078603.1-201ENST00000603824 313 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC073387.2-201ENST00000604797 784 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AL606537.1-201ENST00000607258 2011 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC093151.1-201ENST00000427711 313 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 YWHAZP7-201ENST00000436906 631 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 EXTL2P1-201ENST00000446218 416 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AC002076.2-201ENST00000617362 122 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 AL160394.1-201ENST00000624765 724 ntBASIC1.91□□□□□ -2.1
VPS13AQ96RL7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 USP9YP5-201ENST00000511770 630 ntBASIC1.9□□□□□ -2.1
VPS13AQ96RL7 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC1.9□□□□□ -2.1
VPS13AQ96RL7 PVT1_3.1-201ENST00000620853 95 ntBASIC1.9□□□□□ -2.1
VPS13AQ96RL7 AP006248.2-201ENST00000623309 592 ntBASIC1.9□□□□□ -2.1
VPS13AQ96RL7 MTND5P35-201ENST00000557537 1720 ntBASIC1.9□□□□□ -2.1
VPS13AQ96RL7 MAPK10-266ENST00000641066 6555 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 ZNF542P-204ENST00000482727 1305 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 EXOC5P1-201ENST00000510543 1969 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 RPS3AP9-201ENST00000417027 792 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AC234781.4-201ENST00000419384 244 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 FO393414.1-201ENST00000428697 1184 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 HMGB1P27-201ENST00000431429 603 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 BX322784.1-201ENST00000455793 1077 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 RPS27P27-201ENST00000498779 255 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AC068790.3-201ENST00000602988 553 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AC005005.2-201ENST00000420779 380 ntBASIC1.9□□□□□ -2.11
VPS13AQ96RL7 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.9□□□□□ -2.11
VPS13AQ96RL7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 SAR1AP2-201ENST00000392696 594 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AL591704.1-201ENST00000432574 275 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC108734.3-201ENST00000481241 1165 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 CBX3P4-201ENST00000538909 354 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AGGF1P8-201ENST00000562979 1000 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC005951.1-201ENST00000576706 485 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC244517.12-201ENST00000623581 663 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms