Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL031601.2-202ENST00000622650 282 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AP002512.4-202ENST00000641599 4530 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RNA5SP455-201ENST00000365190 119 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RNU6-639P-201ENST00000384074 107 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RNU6-1179P-201ENST00000384667 107 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC091390.3-201ENST00000426478 338 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 TXNP1-201ENST00000441872 371 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AL445665.1-202ENST00000452436 324 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 CYCSP34-201ENST00000458172 304 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC084198.1-201ENST00000477747 402 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC026801.1-201ENST00000497178 464 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RPS17P5-201ENST00000498293 408 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 SUMO2P6-201ENST00000505273 288 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 HMGB1P22-201ENST00000505315 124 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC096745.1-201ENST00000509945 370 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC092436.3-201ENST00000511788 257 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 CDH12P4-201ENST00000517835 295 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 CDH12P3-201ENST00000517935 295 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 CDH12P1-201ENST00000518435 295 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC136777.2-201ENST00000522979 358 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC098826.3-201ENST00000603823 466 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RNU6-85P-201ENST00000605989 107 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC131238.1-201ENST00000617135 328 ntBASIC4.38□□□□□ -1.71
CCDC140Q96MF4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC140Q96MF4 AC114774.1-201ENST00000507410 1770 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC009962.1-201ENST00000567327 3813 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AL022322.2-201ENST00000624072 20397 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.28-201ENST00000362554 111 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RNU6-1167P-201ENST00000363227 94 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RNU6-593P-201ENST00000364716 112 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 SNORA75B-201ENST00000384053 137 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.480-201ENST00000384364 102 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms