Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 SNORA70.16-201ENST00000516390 95 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 IGKV2-26-201ENST00000518305 343 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 SETP7-201ENST00000552169 453 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC245036.5-201ENST00000596330 847 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC096947.1-201ENST00000603233 470 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 uc_338.1-201ENST00000612113 180 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC104763.3-201ENST00000613765 618 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC243312.2-201ENST00000623340 601 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC012442.3-202ENST00000636742 206 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS39Q96JC1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS39Q96JC1 AC233263.6-201ENST00000631132 1963 ntBASIC3.32□□□□□ -1.88
VPS39Q96JC1 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS39Q96JC1 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS39Q96JC1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS39Q96JC1 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 RNU6-805P-201ENST00000365643 106 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 SUGT1P1-201ENST00000379514 476 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 MIR200C-201ENST00000384980 68 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC245052.5-201ENST00000416320 649 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL353705.1-201ENST00000433468 480 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 HSPD1P21-201ENST00000436541 245 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL121871.1-201ENST00000443413 436 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 RPL21P23-201ENST00000446654 460 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 VN1R10P-201ENST00000447106 875 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC092185.1-201ENST00000491371 97 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 KCTD9P5-201ENST00000504141 1170 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC096571.1-202ENST00000506634 735 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 RNU6-1028P-201ENST00000517164 93 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AP001207.2-201ENST00000519490 539 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS39Q96JC1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 TRAV37-201ENST00000553906 342 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS39Q96JC1 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC091057.3-201ENST00000602684 733 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC092354.2-201ENST00000607786 514 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC097504.2-201ENST00000608088 454 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC009237.15-201ENST00000610252 501 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AC006213.4-201ENST00000616184 634 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL158163.2-201ENST00000619110 700 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 AL445984.1-201ENST00000637834 659 ntBASIC3.31□□□□□ -1.88
VPS39Q96JC1 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS39Q96JC1 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS39Q96JC1 TAB3P1-202ENST00000452645 1634 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNU1-70P-201ENST00000362618 164 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 SNORA73.2-201ENST00000364946 201 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNU6-882P-201ENST00000391025 103 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNU6-1300P-201ENST00000391046 108 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNA5SP252-201ENST00000391131 119 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 RPL23AP22-201ENST00000437556 453 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC092757.1-201ENST00000467293 467 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC113420.1-201ENST00000507903 571 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 RNU1-143P-201ENST00000516296 146 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 RN7SKP282-201ENST00000516824 299 ntBASIC3.3□□□□□ -1.88
VPS39Q96JC1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS39Q96JC1 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms