Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 HMGN1P24-201ENST00000412282 298 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 RPS29P4-201ENST00000414733 161 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC079780.1-201ENST00000428259 207 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC109583.1-201ENST00000432156 268 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 COX6CP2-201ENST00000444980 225 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 UQCRHP3-201ENST00000451503 251 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 PLGLA-201ENST00000465668 449 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC104164.3-201ENST00000467363 1258 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC010301.1-201ENST00000473936 355 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC013828.1-201ENST00000481845 158 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 SNORA31.20-201ENST00000517111 133 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 RNU6-1261P-201ENST00000517194 104 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC027309.2-201ENST00000520566 192 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AC055876.1-202ENST00000567053 138 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AL627309.6-201ENST00000606857 840 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 U3.45-201ENST00000607547 219 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 VIS1.1-201ENST00000610517 203 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AL133445.2-201ENST00000611191 527 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AL138478.1-201ENST00000612252 832 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AL110115.1-201ENST00000614396 364 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC54Q8NEL0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.78□□□□□ -1.97
CCDC54Q8NEL0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 SNORA46-201ENST00000384762 135 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MIR554-201ENST00000384874 96 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 RPL21P3-201ENST00000395517 478 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL024474.1-201ENST00000404655 591 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MIR1193-201ENST00000408109 78 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 RNA5SP274-201ENST00000410484 108 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL133384.1-201ENST00000412744 351 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC233728.2-201ENST00000425348 757 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC012497.1-201ENST00000429392 575 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC011242.1-201ENST00000433596 1158 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC244505.4-201ENST00000434905 287 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 SSXP5-201ENST00000443473 287 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC004022.1-201ENST00000447766 1066 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MTCO1P48-201ENST00000448024 1096 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL034418.1-201ENST00000448675 860 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 TRGVB-201ENST00000453257 471 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC146507.2-201ENST00000460608 476 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC093767.1-201ENST00000504523 156 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 BOLA3P3-201ENST00000505182 232 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MTCYBP16-201ENST00000509187 1129 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 TRMT10BP1-201ENST00000519377 943 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC010376.1-201ENST00000522101 334 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC125611.1-201ENST00000549563 229 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 LSM6P2-201ENST00000552208 177 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MIR3912-201ENST00000577566 105 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 BNIP3P27-201ENST00000599991 412 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AL160237.3-201ENST00000604114 1013 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 AC006329.2-201ENST00000611491 394 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MTND2P41-201ENST00000637599 773 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 MTCO1P23-201ENST00000415223 1526 ntBASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC54Q8NEL0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 NUP58P1-201ENST00000502546 1738 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms