Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 MIR607-201ENST00000385241 96 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.28□□□□□ -1.56
SF3A1Q15459 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 RN7SKP100-201ENST00000411258 284 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 PPP1R11P2-201ENST00000423543 382 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 DPPA2P1-201ENST00000428060 556 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 MTCO2P11-201ENST00000431069 680 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AC005154.2-201ENST00000438110 379 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 MTCO3P45-201ENST00000443036 613 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 RPL23AP31-201ENST00000456160 467 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 RPS29P22-201ENST00000472363 168 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 RN7SL41P-201ENST00000476144 297 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AC023194.1-201ENST00000493084 308 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 NIPA2P2-201ENST00000496376 1083 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AC005921.1-201ENST00000510589 286 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AC023141.12-201ENST00000512399 199 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 FAM60DP-201ENST00000524174 632 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 OR5G4P-201ENST00000525251 760 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 FAM92A1P1-201ENST00000528023 890 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AL110118.1-201ENST00000553543 400 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 EDDM3DP-201ENST00000554692 434 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AC006270.2-201ENST00000578523 652 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 MIR3667-201ENST00000581025 74 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 AF250324.2-201ENST00000608299 610 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 FAM25E-202ENST00000608562 189 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.28□□□□□ -1.56
SF3A1Q15459 uc_338.18-201ENST00000615451 175 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 U6atac.1-201ENST00000616025 117 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 MIR6853-201ENST00000619642 74 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 AC124864.2-201ENST00000624736 186 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 MIR4275-201ENST00000636486 87 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SF3A1Q15459 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.28□□□□□ -1.56
SF3A1Q15459 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.28□□□□□ -1.56
SF3A1Q15459 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.27□□□□□ -1.57
SF3A1Q15459 SNORD56.2-201ENST00000363242 71 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 RNU1-20P-201ENST00000363314 162 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 DUTP6-201ENST00000425573 462 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 RPL23AP25-201ENST00000430973 463 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AC140076.1-201ENST00000449897 361 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 PSPHP1-201ENST00000450062 261 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 RPS3AP14-201ENST00000483907 780 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.27□□□□□ -1.57
SF3A1Q15459 ERHP1-201ENST00000523006 310 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC128657.1-201ENST00000549459 145 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.27□□□□□ -1.57
SF3A1Q15459 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.27□□□□□ -1.57
SF3A1Q15459 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.27□□□□□ -1.57
SF3A1Q15459 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 AP003465.2-201ENST00000602571 373 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AC092794.1-201ENST00000612734 582 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 MLECP1-201ENST00000615893 709 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC091953.3-201ENST00000623220 236 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AC092326.2-201ENST00000624772 1561 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 AL157786.1-207ENST00000627771 695 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC138915.3-201ENST00000562908 1389 ntBASIC5.27□□□□□ -1.57
SF3A1Q15459 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SF3A1Q15459 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SF3A1Q15459 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
SF3A1Q15459 AC009812.4-201ENST00000569134 1805 ntBASIC5.26□□□□□ -1.57
SF3A1Q15459 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SF3A1Q15459 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.26□□□□□ -1.57
SF3A1Q15459 Y_RNA.1-201ENST00000352915 104 ntBASIC5.26□□□□□ -1.57
SF3A1Q15459 SNORA51.2-201ENST00000364595 132 ntBASIC5.26□□□□□ -1.57
SF3A1Q15459 RNA5SP151-201ENST00000365632 117 ntBASIC5.26□□□□□ -1.57
SF3A1Q15459 RNU6-76P-201ENST00000384060 104 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms