Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 RNU6-189P-201ENST00000516120 101 ntBASIC4.92□□□□□ -1.62
RNF4P78317 PTP4A1P6-201ENST00000531034 478 ntBASIC4.92□□□□□ -1.62
RNF4P78317 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.92□□□□□ -1.62
RNF4P78317 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.92□□□□□ -1.62
RNF4P78317 AC138761.3-201ENST00000579993 334 ntBASIC4.92□□□□□ -1.62
RNF4P78317 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.92□□□□□ -1.62
RNF4P78317 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.92□□□□□ -1.62
RNF4P78317 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.92□□□□□ -1.62
RNF4P78317 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 AC126915.2-201ENST00000610957 190 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AL627230.1-201ENST00000613077 211 ntBASIC4.92□□□□□ -1.62
RNF4P78317 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.92□□□□□ -1.62
RNF4P78317 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 AL596275.2-204ENST00000641628 552 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AL596275.2-206ENST00000641957 626 ntBASIC4.92□□□□□ -1.62
RNF4P78317 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
RNF4P78317 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.91□□□□□ -1.62
RNF4P78317 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
RNF4P78317 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.91□□□□□ -1.62
RNF4P78317 RNU1-19P-201ENST00000363306 165 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU6-1188P-201ENST00000363795 107 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU6-82P-201ENST00000363970 107 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU1-43P-201ENST00000365052 165 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC019155.1-201ENST00000382242 574 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU6-574P-201ENST00000384265 107 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU6-754P-201ENST00000391166 107 ntBASIC4.91□□□□□ -1.62
RNF4P78317 EIF4E2P1-201ENST00000393781 255 ntBASIC4.91□□□□□ -1.62
RNF4P78317 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.91□□□□□ -1.62
RNF4P78317 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.91□□□□□ -1.62
RNF4P78317 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.91□□□□□ -1.62
RNF4P78317 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.91□□□□□ -1.62
RNF4P78317 AL139148.1-201ENST00000427122 680 ntBASIC4.91□□□□□ -1.62
RNF4P78317 FABP5P14-201ENST00000437273 393 ntBASIC4.91□□□□□ -1.62
RNF4P78317 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.91□□□□□ -1.62
RNF4P78317 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.91□□□□□ -1.62
RNF4P78317 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.91□□□□□ -1.62
RNF4P78317 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.91□□□□□ -1.62
RNF4P78317 RPS15AP27-201ENST00000449183 343 ntBASIC4.91□□□□□ -1.62
RNF4P78317 MTCO3P10-201ENST00000455912 772 ntBASIC4.91□□□□□ -1.62
RNF4P78317 Y_RNA.653-201ENST00000459091 95 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC008481.1-201ENST00000463278 396 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AP000797.2-201ENST00000475768 606 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
RNF4P78317 NDUFB5P1-201ENST00000508134 564 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC098591.2-201ENST00000510152 315 ntBASIC4.91□□□□□ -1.62
RNF4P78317 TBCAP3-201ENST00000512475 312 ntBASIC4.91□□□□□ -1.62
RNF4P78317 PTP4A1P4-201ENST00000512479 322 ntBASIC4.91□□□□□ -1.62
RNF4P78317 RNU6-1213P-201ENST00000517075 94 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC022360.1-201ENST00000521058 340 ntBASIC4.91□□□□□ -1.62
RNF4P78317 HMGN1P28-201ENST00000521340 364 ntBASIC4.91□□□□□ -1.62
RNF4P78317 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.91□□□□□ -1.62
RNF4P78317 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.91□□□□□ -1.62
RNF4P78317 RANP3-201ENST00000530970 276 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.91□□□□□ -1.62
RNF4P78317 AC018630.1-201ENST00000541376 925 ntBASIC4.91□□□□□ -1.62
RNF4P78317 IMMP1LP2-201ENST00000552954 492 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC127381.1-201ENST00000555979 939 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.91□□□□□ -1.62
RNF4P78317 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 MIR4472-2-201ENST00000582069 67 ntBASIC4.91□□□□□ -1.62
RNF4P78317 AC106900.2-201ENST00000604994 317 ntBASIC4.91□□□□□ -1.62
RNF4P78317 ATP1B3P1-201ENST00000605365 821 ntBASIC4.91□□□□□ -1.62
RNF4P78317 MTND4P1-201ENST00000457501 1466 ntBASIC4.91□□□□□ -1.62
RNF4P78317 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
RNF4P78317 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.91□□□□□ -1.62
RNF4P78317 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.9□□□□□ -1.62
RNF4P78317 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
RNF4P78317 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
RNF4P78317 OR5P1P-201ENST00000299512 925 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RN7SKP145-201ENST00000363291 303 ntBASIC4.9□□□□□ -1.63
RNF4P78317 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
RNF4P78317 SMIM11P1-201ENST00000369586 178 ntBASIC4.9□□□□□ -1.63
RNF4P78317 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 RNU6-946P-201ENST00000383878 107 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RNU6-1127P-201ENST00000384580 107 ntBASIC4.9□□□□□ -1.63
RNF4P78317 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
RNF4P78317 RNU6-821P-201ENST00000390995 107 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms