Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.05□□□□□ -1.6
MRE11P49959 AL391840.1-201ENST00000571144 367 ntBASIC5.05□□□□□ -1.6
MRE11P49959 MIR544B-201ENST00000582372 78 ntBASIC5.05□□□□□ -1.6
MRE11P49959 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.05□□□□□ -1.6
MRE11P49959 AL139286.1-201ENST00000604465 483 ntBASIC5.05□□□□□ -1.6
MRE11P49959 AL365503.1-201ENST00000605247 905 ntBASIC5.05□□□□□ -1.6
MRE11P49959 AL390208.1-201ENST00000605885 644 ntBASIC5.05□□□□□ -1.6
MRE11P49959 AC008536.2-201ENST00000607284 349 ntBASIC5.05□□□□□ -1.6
MRE11P49959 AL590282.1-201ENST00000610379 1136 ntBASIC5.05□□□□□ -1.6
MRE11P49959 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.05□□□□□ -1.6
MRE11P49959 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
MRE11P49959 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
MRE11P49959 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC5.05□□□□□ -1.6
MRE11P49959 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MRE11P49959 AL592148.3-201ENST00000608771 2646 ntBASIC5.05□□□□□ -1.6
MRE11P49959 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MRE11P49959 AL442639.1-201ENST00000625030 1899 ntBASIC5.05□□□□□ -1.6
MRE11P49959 CASC19-280ENST00000642102 1351 ntBASIC5.04□□□□□ -1.6
MRE11P49959 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.04□□□□□ -1.6
MRE11P49959 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.04□□□□□ -1.6
MRE11P49959 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 AL590240.1-201ENST00000334118 313 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RNU6-181P-201ENST00000363225 107 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RNU6-1090P-201ENST00000364065 94 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RNU6-777P-201ENST00000364265 104 ntBASIC5.04□□□□□ -1.6
MRE11P49959 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.04□□□□□ -1.6
MRE11P49959 MT-TL1-201ENST00000386347 75 ntBASIC5.04□□□□□ -1.6
MRE11P49959 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MRE11P49959 RNU6-876P-201ENST00000391295 104 ntBASIC5.04□□□□□ -1.6
MRE11P49959 SNORA3C-201ENST00000408792 125 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RN7SKP285-201ENST00000410137 318 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 RPL7P30-201ENST00000420888 709 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RPEP3-201ENST00000425462 676 ntBASIC5.04□□□□□ -1.6
MRE11P49959 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 NPM1P34-201ENST00000428821 893 ntBASIC5.04□□□□□ -1.6
MRE11P49959 LSM1P1-201ENST00000438629 273 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AL356535.1-201ENST00000440335 398 ntBASIC5.04□□□□□ -1.6
MRE11P49959 USP9YP8-201ENST00000441913 500 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.04□□□□□ -1.6
MRE11P49959 H2AFZP5-201ENST00000446960 382 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.04□□□□□ -1.6
MRE11P49959 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.04□□□□□ -1.6
MRE11P49959 RPS15AP1-201ENST00000457423 391 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RPL7P15-201ENST00000461190 712 ntBASIC5.04□□□□□ -1.6
MRE11P49959 RPS3AP14-201ENST00000483907 780 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.04□□□□□ -1.6
MRE11P49959 RNU6-202P-201ENST00000515998 96 ntBASIC5.04□□□□□ -1.6
MRE11P49959 OR5M2P-201ENST00000529003 936 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.04□□□□□ -1.6
MRE11P49959 HMGB1P33-201ENST00000563485 527 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC090616.5-202ENST00000582111 297 ntBASIC5.04□□□□□ -1.6
MRE11P49959 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.04□□□□□ -1.6
MRE11P49959 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.04□□□□□ -1.6
MRE11P49959 BNIP3P9-201ENST00000603714 553 ntBASIC5.04□□□□□ -1.6
MRE11P49959 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.04□□□□□ -1.6
MRE11P49959 AC008277.2-201ENST00000605196 797 ntBASIC5.04□□□□□ -1.6
MRE11P49959 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 AP001330.5-201ENST00000607176 411 ntBASIC5.04□□□□□ -1.6
MRE11P49959 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
MRE11P49959 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.04□□□□□ -1.6
MRE11P49959 AC117529.2-201ENST00000512159 2068 ntBASIC5.04□□□□□ -1.6
MRE11P49959 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.04□□□□□ -1.6
MRE11P49959 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
MRE11P49959 AC022031.1-201ENST00000585985 2593 ntBASIC5.04□□□□□ -1.6
MRE11P49959 AC010300.1-201ENST00000600671 5134 ntBASIC5.04□□□□□ -1.6
MRE11P49959 MTND4P12-201ENST00000498999 1377 ntBASIC5.04□□□□□ -1.6
MRE11P49959 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
MRE11P49959 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MRE11P49959 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MRE11P49959 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MRE11P49959 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MRE11P49959 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.03□□□□□ -1.6
MRE11P49959 SNRPEP2-201ENST00000397592 279 ntBASIC5.03□□□□□ -1.6
MRE11P49959 AL121972.1-201ENST00000402023 252 ntBASIC5.03□□□□□ -1.6
MRE11P49959 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.03□□□□□ -1.6
MRE11P49959 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.03□□□□□ -1.6
MRE11P49959 Y_RNA.608-201ENST00000410647 95 ntBASIC5.03□□□□□ -1.6
MRE11P49959 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.03□□□□□ -1.6
MRE11P49959 AL358934.1-201ENST00000432346 324 ntBASIC5.03□□□□□ -1.6
MRE11P49959 RPS26P40-201ENST00000435209 294 ntBASIC5.03□□□□□ -1.6
MRE11P49959 AC009961.2-201ENST00000435771 251 ntBASIC5.03□□□□□ -1.6
MRE11P49959 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.03□□□□□ -1.6
MRE11P49959 MTCO1P48-201ENST00000448024 1096 ntBASIC5.03□□□□□ -1.6
MRE11P49959 SLC25A18P1-201ENST00000449385 454 ntBASIC5.03□□□□□ -1.6
MRE11P49959 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.03□□□□□ -1.6
MRE11P49959 AP000852.1-201ENST00000472460 573 ntBASIC5.03□□□□□ -1.6
MRE11P49959 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.03□□□□□ -1.6
MRE11P49959 AC017015.1-201ENST00000477387 286 ntBASIC5.03□□□□□ -1.6
MRE11P49959 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.03□□□□□ -1.6
MRE11P49959 AC106872.3-201ENST00000495104 446 ntBASIC5.03□□□□□ -1.6
MRE11P49959 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.03□□□□□ -1.6
MRE11P49959 HMGB1P29-201ENST00000505659 499 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms