Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.35□□□□□ -1.87
SOX3P41225 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 Z83846.1-201ENST00000446798 265 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AL358232.1-201ENST00000448030 501 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC099563.1-201ENST00000456086 418 ntBASIC3.35□□□□□ -1.87
SOX3P41225 RPL31P50-201ENST00000471002 296 ntBASIC3.35□□□□□ -1.87
SOX3P41225 RPL30P6-201ENST00000475925 342 ntBASIC3.35□□□□□ -1.87
SOX3P41225 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX3P41225 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX3P41225 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.35□□□□□ -1.87
SOX3P41225 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.35□□□□□ -1.87
SOX3P41225 RNA5SP216-201ENST00000516111 123 ntBASIC3.35□□□□□ -1.87
SOX3P41225 Y_RNA.688-201ENST00000516565 95 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.35□□□□□ -1.87
SOX3P41225 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX3P41225 AL139174.1-201ENST00000531489 886 ntBASIC3.35□□□□□ -1.87
SOX3P41225 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.35□□□□□ -1.87
SOX3P41225 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.35□□□□□ -1.87
SOX3P41225 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 AC136618.2-201ENST00000575091 400 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC053481.3-201ENST00000577881 843 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 AC008739.3-201ENST00000603262 127 ntBASIC3.35□□□□□ -1.87
SOX3P41225 Z99497.2-201ENST00000603634 310 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC010591.1-201ENST00000603941 649 ntBASIC3.35□□□□□ -1.87
SOX3P41225 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AC072039.2-201ENST00000608883 439 ntBASIC3.35□□□□□ -1.87
SOX3P41225 AL713922.2-201ENST00000619384 716 ntBASIC3.35□□□□□ -1.87
SOX3P41225 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 AC006065.5-201ENST00000623427 349 ntBASIC3.35□□□□□ -1.87
SOX3P41225 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.35□□□□□ -1.87
SOX3P41225 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX3P41225 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX3P41225 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.35□□□□□ -1.87
SOX3P41225 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX3P41225 AC090337.1-201ENST00000579651 2074 ntBASIC3.34□□□□□ -1.87
SOX3P41225 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
SOX3P41225 RPL21P132-201ENST00000331267 462 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RPL23AP57-201ENST00000332361 466 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RNU6-500P-201ENST00000362349 107 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RNA5SP88-201ENST00000365560 109 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX3P41225 RPS15AP38-201ENST00000413110 372 ntBASIC3.34□□□□□ -1.87
SOX3P41225 MTCYBP24-201ENST00000420387 1106 ntBASIC3.34□□□□□ -1.87
SOX3P41225 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX3P41225 GLRXP1-201ENST00000423261 334 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.34□□□□□ -1.87
SOX3P41225 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.34□□□□□ -1.87
SOX3P41225 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SOX3P41225 SETP8-201ENST00000435341 628 ntBASIC3.34□□□□□ -1.87
SOX3P41225 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.34□□□□□ -1.87
SOX3P41225 ANP32BP2-201ENST00000454525 545 ntBASIC3.34□□□□□ -1.87
SOX3P41225 SUMO2P2-201ENST00000456482 255 ntBASIC3.34□□□□□ -1.87
SOX3P41225 MEMO1P3-201ENST00000459811 302 ntBASIC3.34□□□□□ -1.87
SOX3P41225 FCF1P3-201ENST00000496394 590 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC006499.5-201ENST00000505037 514 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC111000.2-201ENST00000507775 550 ntBASIC3.34□□□□□ -1.87
SOX3P41225 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.34□□□□□ -1.87
SOX3P41225 MTCYBP43-201ENST00000513621 740 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RN7SKP116-201ENST00000516902 319 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RN7SKP60-201ENST00000516985 239 ntBASIC3.34□□□□□ -1.87
SOX3P41225 RANP9-201ENST00000519957 271 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX3P41225 AC022861.1-201ENST00000522981 663 ntBASIC3.34□□□□□ -1.87
SOX3P41225 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX3P41225 OR6C73P-201ENST00000546432 358 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX3P41225 AC023161.2-201ENST00000551218 780 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC007954.1-201ENST00000554198 494 ntBASIC3.34□□□□□ -1.87
SOX3P41225 MIR3922-201ENST00000585192 84 ntBASIC3.34□□□□□ -1.87
SOX3P41225 BNIP3P33-201ENST00000598912 569 ntBASIC3.34□□□□□ -1.87
SOX3P41225 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.34□□□□□ -1.87
SOX3P41225 AC004009.2-201ENST00000623016 728 ntBASIC3.34□□□□□ -1.87
SOX3P41225 PCMTD1P7-201ENST00000634506 357 ntBASIC3.34□□□□□ -1.87
SOX3P41225 MIR3974-201ENST00000637126 96 ntBASIC3.34□□□□□ -1.87
SOX3P41225 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX3P41225 MTND5P3-201ENST00000438536 1800 ntBASIC3.34□□□□□ -1.87
SOX3P41225 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SOX3P41225 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX3P41225 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SOX3P41225 AL356473.1-201ENST00000406203 1408 ntBASIC3.34□□□□□ -1.88
SOX3P41225 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.34□□□□□ -1.88
SOX3P41225 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
SOX3P41225 AC097714.1-201ENST00000511272 1647 ntBASIC3.33□□□□□ -1.88
SOX3P41225 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SOX3P41225 RNU6-433P-201ENST00000363216 104 ntBASIC3.33□□□□□ -1.88
SOX3P41225 RNU6-761P-201ENST00000384148 107 ntBASIC3.33□□□□□ -1.88
SOX3P41225 U3.29-201ENST00000391296 212 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 AC009237.5-201ENST00000414271 501 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC009518.2-201ENST00000418056 731 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC083875.1-201ENST00000419509 405 ntBASIC3.33□□□□□ -1.88
SOX3P41225 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 MTCO2P5-201ENST00000422621 426 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms