Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC004486.1-201ENST00000546846 233 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC107016.2-201ENST00000547968 190 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.13□□□□□ -2.07
HLA-DMBP28068 DNAJC8P1-201ENST00000554535 372 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.13□□□□□ -2.07
HLA-DMBP28068 HSPE1P14-201ENST00000605812 302 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC009570.1-201ENST00000609599 745 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 FRG1HP-204ENST00000617940 757 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC010338.1-201ENST00000621823 717 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC095031.1-201ENST00000623685 672 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AL121594.5-201ENST00000631724 573 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.13□□□□□ -2.07
HLA-DMBP28068 FRG1DP-201ENST00000635586 771 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC090740.1-201ENST00000623193 2262 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HLA-DMBP28068 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.13□□□□□ -2.07
HLA-DMBP28068 SEC63P2-201ENST00000503863 1939 ntBASIC2.13□□□□□ -2.07
HLA-DMBP28068 AC233263.6-201ENST00000631132 1963 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-DMBP28068 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-DMBP28068 NACA3P-201ENST00000359690 648 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-DMBP28068 CD24P4-201ENST00000382840 243 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 RNU6-444P-201ENST00000383988 108 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 RNU6-441P-201ENST00000384545 106 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 ZNF736P10Y-201ENST00000403990 1110 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL589655.1-201ENST00000405398 482 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MIR1289-1-201ENST00000408836 144 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL592148.1-201ENST00000413568 445 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL606495.1-201ENST00000422100 813 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC073310.1-201ENST00000423226 1033 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 RPS20P5-201ENST00000434808 360 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-DMBP28068 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 RPL9P33-201ENST00000484311 566 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-DMBP28068 SEM1P1-201ENST00000506694 209 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC026801.2-201ENST00000515352 425 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC090136.1-201ENST00000520009 240 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 HPRT1P3-201ENST00000539521 576 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 MIR3670-2-201ENST00000582974 65 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MIR3670-1-201ENST00000584160 65 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MIR3670-3-201ENST00000584855 65 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 ZNF861P-201ENST00000588126 639 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AP000787.2-201ENST00000604432 568 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 MIR3670-4-201ENST00000612260 65 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC090116.1-201ENST00000615679 446 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 SNHG22-203ENST00000617833 660 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC006249.1-201ENST00000621223 471 ntBASIC2.12□□□□□ -2.07
HLA-DMBP28068 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
HLA-DMBP28068 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC244517.1-201ENST00000606030 2086 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
HLA-DMBP28068 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 RNU6-799P-201ENST00000363567 107 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 SNORA5B-201ENST00000363786 132 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 SNORA80A-201ENST00000363922 136 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HLA-DMBP28068 RNU6-730P-201ENST00000383954 104 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AL512633.1-201ENST00000399931 655 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 UBE2V1P9-201ENST00000414760 368 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC096632.1-201ENST00000427395 310 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 ZNF965P-201ENST00000432501 817 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 UBE2V2P3-201ENST00000433562 437 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC107083.1-201ENST00000439643 279 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AL645638.1-201ENST00000440519 361 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC112653.1-201ENST00000443851 386 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 MRPL50P4-201ENST00000446432 475 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 SNORA59A-201ENST00000459326 152 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 AP000852.1-201ENST00000472460 573 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 RPS29P26-201ENST00000477483 171 ntBASIC2.11□□□□□ -2.07
HLA-DMBP28068 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
HLA-DMBP28068 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.11□□□□□ -2.07
HLA-DMBP28068 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms