Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
TRIM38O00635 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 MIR331-201ENST00000362302 94 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 RNU6-263P-201ENST00000363811 107 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 RNU6-289P-201ENST00000364093 107 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 SNORD74.4-201ENST00000364129 80 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AL133412.1-201ENST00000380194 2992 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 SNORA48.7-201ENST00000391302 135 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 TPMTP3-201ENST00000411928 735 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 USP9YP6-201ENST00000413550 854 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 AL139095.3-201ENST00000419672 1203 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AC092647.1-201ENST00000420654 287 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 RPS27AP14-201ENST00000422868 454 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 RPL7P52-201ENST00000449200 742 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 AL645939.1-201ENST00000453429 797 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 snoU13.8-201ENST00000458890 104 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 RPS4XP10-201ENST00000465034 731 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 SLC25A15P5-201ENST00000508033 253 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM38O00635 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 AP000907.4-201ENST00000604143 237 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AL451044.1-201ENST00000604867 238 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AC113403.1-201ENST00000604910 193 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AC107214.2-201ENST00000608204 634 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AC012360.2-201ENST00000609349 391 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 AL359697.1-201ENST00000624879 587 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.35□□□□□ -1.71
TRIM38O00635 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 OR11H5P-202ENST00000641612 1325 ntBASIC4.35□□□□□ -1.71
TRIM38O00635 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM38O00635 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM38O00635 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
TRIM38O00635 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM38O00635 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
TRIM38O00635 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
TRIM38O00635 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM38O00635 AC244517.1-201ENST00000606030 2086 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC068254.2-201ENST00000623938 3577 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
TRIM38O00635 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
TRIM38O00635 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM38O00635 SNORA72.1-201ENST00000363485 129 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RNU1-64P-201ENST00000365443 163 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RNU6-359P-201ENST00000365466 108 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
TRIM38O00635 RNU1-13P-201ENST00000384499 162 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RPL32P23-201ENST00000397237 405 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 MIR1277-201ENST00000408536 78 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.34□□□□□ -1.71
TRIM38O00635 AC127526.1-201ENST00000417526 366 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AL389915.1-201ENST00000422463 466 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM38O00635 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM38O00635 AL512286.1-201ENST00000439244 400 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 MTND4LP16-201ENST00000440828 295 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM38O00635 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 AC079804.1-201ENST00000461922 436 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC004924.1-201ENST00000480160 781 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RPS4XP15-201ENST00000489210 795 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AP001025.2-201ENST00000490908 477 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC079382.1-201ENST00000493346 557 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC034222.1-201ENST00000494052 532 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC006390.1-201ENST00000508068 283 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM38O00635 Vault.1-201ENST00000516474 102 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 RN7SKP244-201ENST00000516513 307 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM38O00635 RAB11AP2-201ENST00000545905 639 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM38O00635 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM38O00635 BNIP3P23-201ENST00000599655 511 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC004853.1-201ENST00000604902 698 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC011816.2-201ENST00000607089 556 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC006566.1-201ENST00000608943 513 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 AC025594.3-201ENST00000613068 790 ntBASIC4.34□□□□□ -1.71
TRIM38O00635 Y_RNA.804-201ENST00000615262 101 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms