Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC008033.2-201ENST00000542626 177 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC133555.2-201ENST00000550213 292 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 SETP7-201ENST00000552169 453 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 UBE2L4-201ENST00000587688 464 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC087045.1-201ENST00000605856 382 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC009994.1-201ENST00000606889 253 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL136221.1-201ENST00000621449 509 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL158801.5-201ENST00000623123 465 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL159972.1-201ENST00000625150 448 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AC027287.1-201ENST00000553115 1453 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 AL672167.1-203ENST00000641299 2975 ntBASIC4.22□□□□□ -1.73
VSX1Q9NZR4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
VSX1Q9NZR4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
VSX1Q9NZR4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
VSX1Q9NZR4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
VSX1Q9NZR4 INTS6P1-201ENST00000504674 2530 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 OR5J1P-201ENST00000313544 939 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 U3.11-201ENST00000364476 212 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 MT-TC-201ENST00000387405 66 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 MIR921-201ENST00000401133 56 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL807761.1-201ENST00000417622 171 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 CHIAP3-201ENST00000423668 1133 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 RPS6P12-201ENST00000432491 726 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 ELOCP18-201ENST00000434209 337 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC025164.1-201ENST00000496249 478 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC091951.2-201ENST00000500762 203 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 FTH1P21-201ENST00000512179 511 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 RNU2-10P-201ENST00000516375 211 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 RNU6-835P-201ENST00000516974 104 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 OR5BN1P-201ENST00000532955 829 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC015912.2-201ENST00000571053 181 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC015917.1-201ENST00000579654 510 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC025449.1-201ENST00000603896 529 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC115621.1-201ENST00000604653 858 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL136295.6-201ENST00000610486 658 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 FAM27B-201ENST00000610601 213 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 SDR42E1P1-201ENST00000611327 477 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC245517.5-201ENST00000611529 162 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL590099.1-201ENST00000615276 138 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC006504.8-201ENST00000621046 635 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC244100.1-202ENST00000621554 382 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AC093648.1-201ENST00000623546 606 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 MTND4P29-201ENST00000503122 1372 ntBASIC4.21□□□□□ -1.74
VSX1Q9NZR4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.21□□□□□ -1.74
VSX1Q9NZR4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 ZNF680P1-201ENST00000436625 1469 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 RN7SKP104-201ENST00000362605 328 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 RNU4-76P-201ENST00000364509 141 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 Y_RNA.263-201ENST00000364659 114 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 RNU6-339P-201ENST00000384310 107 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 SPTLC1P2-201ENST00000407089 121 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 RPS27AP12-201ENST00000429552 465 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 GTF2IP20-201ENST00000431663 360 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL606489.2-201ENST00000433886 234 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC016691.1-201ENST00000441321 413 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.2□□□□□ -1.74
VSX1Q9NZR4 RAC1P7-201ENST00000445367 377 ntBASIC4.2□□□□□ -1.74
VSX1Q9NZR4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms