Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
DDX56Q9NY93 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
DDX56Q9NY93 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
DDX56Q9NY93 RNY1P12-201ENST00000364251 105 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 RNU6-1119P-201ENST00000384349 108 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 RPL23AP32-201ENST00000395315 459 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 RNA5SP107-201ENST00000411358 122 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AL356867.1-201ENST00000429623 299 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 USP12PX-201ENST00000432383 1057 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC005094.1-201ENST00000440420 368 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AL022238.1-201ENST00000442557 355 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 RPL23AP43-201ENST00000446445 471 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AK3P4-201ENST00000504283 583 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 RNU2-46P-201ENST00000517038 113 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 RPL23AP97-201ENST00000568955 471 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 BDH2P1-201ENST00000602288 736 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 AC012557.2-201ENST00000605919 418 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 SNHG22-203ENST00000617833 660 ntBASIC4.66□□□□□ -1.66
DDX56Q9NY93 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
DDX56Q9NY93 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
DDX56Q9NY93 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
DDX56Q9NY93 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
DDX56Q9NY93 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
DDX56Q9NY93 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
DDX56Q9NY93 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.65□□□□□ -1.66
DDX56Q9NY93 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
DDX56Q9NY93 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
DDX56Q9NY93 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
DDX56Q9NY93 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
DDX56Q9NY93 RNU1-108P-201ENST00000362556 161 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 RNA5SP502-201ENST00000362694 119 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 RNA5SP28-201ENST00000363841 119 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 RNU4-75P-201ENST00000364621 146 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 Y_RNA.359-201ENST00000365498 102 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
DDX56Q9NY93 OR5H15-201ENST00000383696 930 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC110754.1-201ENST00000399740 601 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 DEFB108C-201ENST00000400154 252 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 RN7SKP106-201ENST00000410832 272 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 C1DP2-201ENST00000418167 426 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC011753.3-201ENST00000443436 406 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL136380.1-201ENST00000447970 162 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL162591.2-201ENST00000449634 317 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 GAPDHP17-201ENST00000449858 1001 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 MTND2P24-201ENST00000453434 806 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 KLF3P2-201ENST00000465138 268 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
DDX56Q9NY93 OR7H2P-201ENST00000513483 306 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC015795.1-201ENST00000513669 327 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 RNA5SP73-201ENST00000516744 108 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AP005205.1-201ENST00000563503 508 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 ZNF192P1-203ENST00000565888 810 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 MIR4528-201ENST00000577763 90 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC087683.1-201ENST00000591187 441 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.65□□□□□ -1.67
DDX56Q9NY93 AL391813.2-201ENST00000609113 322 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AP000254.1-201ENST00000609934 520 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC091304.9-201ENST00000612091 226 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC013476.2-201ENST00000614456 459 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 uc_338.32-201ENST00000615087 172 ntBASIC4.65□□□□□ -1.67
DDX56Q9NY93 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 153 ms