Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.67-201ENST00000362870 100 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 RNY3P13-201ENST00000365542 102 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.384-201ENST00000383909 102 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 EZH2P1-201ENST00000431167 291 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC092162.1-201ENST00000432828 434 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC236972.2-201ENST00000434979 310 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC073415.1-201ENST00000449240 153 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 FTH1P21-201ENST00000512179 511 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 RNU6-1314P-201ENST00000517139 104 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AP003072.1-201ENST00000531740 145 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 PSMA3P-201ENST00000555485 635 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC034105.4-201ENST00000568304 277 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC110743.1-201ENST00000584870 478 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC011477.5-201ENST00000586571 259 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 AC244100.1-202ENST00000621554 382 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 U3.53-201ENST00000628922 216 ntBASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC87Q9NVE4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 PHKBP1-201ENST00000450951 1951 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC010266.2-201ENST00000564741 3255 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.100-201ENST00000363141 102 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 SNORA71.2-201ENST00000364941 134 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 SNORA32.2-201ENST00000384049 122 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.474-201ENST00000384341 102 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 RNU6-193P-201ENST00000410977 107 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 HMGN1P24-201ENST00000412282 298 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 RPL31P2-201ENST00000413849 377 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 NAP1L1P2-201ENST00000414182 1089 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC009302.1-201ENST00000417147 390 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 HMGN2P26-201ENST00000463169 339 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 MRPS17P3-201ENST00000465453 385 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC006512.1-201ENST00000468816 291 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC012123.2-201ENST00000485809 248 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.691-201ENST00000516611 103 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 BTF3P12-201ENST00000519620 469 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AP001284.1-201ENST00000528393 2118 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 ARL6IP1P1-201ENST00000545836 610 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC090948.1-201ENST00000607464 549 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC245517.5-201ENST00000611529 162 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 SOCS5P3-201ENST00000425115 1576 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AC007529.1-201ENST00000418574 2178 ntBASIC6□□□□□ -1.45
CCDC87Q9NVE4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC87Q9NVE4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AL138713.1-201ENST00000624026 2130 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 RNU6-249P-201ENST00000363016 102 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 U3.11-201ENST00000364476 212 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 MIR454-201ENST00000390180 115 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AL445189.1-201ENST00000405722 338 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 RNU2-21P-201ENST00000410368 188 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 DUTP6-201ENST00000425573 462 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms