Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 ZNF90P2-204ENST00000419323 1075 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC244098.2-201ENST00000422068 99 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 NDUFS5P3-201ENST00000450668 321 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 FABP3P2-201ENST00000453169 399 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC104308.1-201ENST00000454621 333 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 FGF7P3-201ENST00000454645 303 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 SNORD121B-201ENST00000458838 81 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 RN7SL738P-201ENST00000470264 297 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC006463.2-201ENST00000473326 348 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 HIGD1AP5-201ENST00000529959 259 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 BNIP3P1-201ENST00000547295 580 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AL512310.1-201ENST00000548639 172 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AL512360.1-201ENST00000555346 234 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 MIR4330-201ENST00000579077 105 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC091042.1-201ENST00000579213 173 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AL121655.1-201ENST00000605811 308 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 Y_RNA.1-201ENST00000352915 104 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RNA5SP191-201ENST00000362585 102 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 U3.20-201ENST00000390909 217 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC013442.1-201ENST00000397347 228 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RPL23AP48-201ENST00000406913 488 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RNA5SP113-201ENST00000410486 84 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RNU6-712P-201ENST00000410558 100 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RNU2-47P-201ENST00000410649 186 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 JKAMPP1-201ENST00000413804 919 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC013429.2-201ENST00000418798 781 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 USP9YP36-201ENST00000424581 829 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC093414.1-201ENST00000434712 514 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 UBE2V1P13-201ENST00000436983 439 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AP003497.1-201ENST00000528472 562 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC093027.1-201ENST00000546698 429 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 CR383656.7-201ENST00000548164 174 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 RPL12P25-202ENST00000598100 674 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL512782.1-201ENST00000603093 364 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL161729.3-201ENST00000603533 673 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL391646.1-201ENST00000603860 190 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AL031176.1-201ENST00000604554 466 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 BNIP3P10-201ENST00000605360 577 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC093788.1-201ENST00000609356 927 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 AC079597.1-201ENST00000624306 508 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 FARSBP1-201ENST00000435808 1778 ntBASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CLIP3Q96DZ5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC092125.1-201ENST00000562568 1995 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL645937.1-201ENST00000641739 1652 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms