Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AL590233.1-201ENST00000430017 456 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 MTND6P13-201ENST00000443510 523 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 RPS3AP17-201ENST00000472594 777 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AC090686.1-201ENST00000481577 749 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 RNU6-430P-201ENST00000517078 107 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AC090136.1-201ENST00000520009 240 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AC084757.1-201ENST00000559987 490 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 VN1R79P-201ENST00000593540 513 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SMC1BQ8NDV3 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 RN7SKP226-201ENST00000364912 300 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 RNVU1-14-201ENST00000384770 164 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 FAM103A2P-201ENST00000444122 354 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 BX276092.4-201ENST00000452056 248 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC022483.1-201ENST00000514020 567 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 RNA5SP249-201ENST00000516127 99 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 RNU6-714P-201ENST00000516963 103 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 RN7SKP289-201ENST00000517244 295 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 MTCO2P4-201ENST00000517968 247 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC107918.3-201ENST00000533272 382 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC090615.1-201ENST00000577519 154 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 MIR3913-1-201ENST00000577744 102 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AL009028.1-201ENST00000604895 802 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC113194.1-201ENST00000606037 500 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 AC110994.2-201ENST00000635481 492 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 OR5H6-203ENST00000642105 978 ntBASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.09□□□□□ -1.59
SMC1BQ8NDV3 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SMC1BQ8NDV3 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SMC1BQ8NDV3 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 RNU6-213P-201ENST00000384051 104 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL356421.1-201ENST00000403255 413 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL078595.1-201ENST00000404458 226 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 PSMA6P3-201ENST00000428242 164 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 RPS20P32-201ENST00000456044 356 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 snoU13.8-201ENST00000458890 104 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AC004924.1-201ENST00000480160 781 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 RPL9P6-201ENST00000492764 598 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 SNORD116-26-201ENST00000516006 96 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 RNA5SP73-201ENST00000516744 108 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL157394.1-201ENST00000562983 1224 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 NRBF2P1-201ENST00000587407 859 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL161729.4-201ENST00000604650 476 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL354984.3-201ENST00000604803 325 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AL021997.2-201ENST00000615674 271 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 AC099654.13-201ENST00000639774 207 ntBASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMC1BQ8NDV3 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SMC1BQ8NDV3 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms