Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 DUXAP10-204ENST00000612052 616 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AL121772.2-201ENST00000614331 297 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AL034408.1-202ENST00000636088 415 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 FRG1BP-201ENST00000278882 761 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RNA5SP119-201ENST00000362715 117 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 SNORD46.1-201ENST00000364139 104 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RNU6-1197P-201ENST00000391183 107 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RPL21P17-201ENST00000397467 475 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RNA5SP293-201ENST00000410527 113 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AL590383.1-201ENST00000428602 75 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 YME1L1P1-201ENST00000429435 297 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RPL23AP69-201ENST00000431134 458 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC024082.2-201ENST00000434771 238 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 COX6CP18-201ENST00000448769 222 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RPL30P5-201ENST00000494923 336 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 ARL4AP2-201ENST00000507378 601 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RN7SKP18-201ENST00000516005 275 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 SNORA64.4-201ENST00000516632 81 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 MIR2276-201ENST00000516886 89 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 RNU6-1261P-201ENST00000517194 104 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC103783.1-201ENST00000520506 373 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 BNIP3P39-201ENST00000601077 554 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AP000240.1-201ENST00000609910 452 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC068880.4-201ENST00000623082 495 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC106858.1-201ENST00000637497 429 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 AC007823.1-201ENST00000569932 1566 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 GABRG2-229ENST00000641017 3628 ntBASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
ZNF540Q8NDQ6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC097714.1-201ENST00000511272 1647 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 ZNF285B-201ENST00000561698 1767 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 RNA5SP383-201ENST00000362934 120 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AL356131.1-201ENST00000405826 414 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 RPL5P18-201ENST00000406671 891 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 RNU2-47P-201ENST00000410649 186 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 CCDC58P2-201ENST00000417131 366 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AL356867.1-201ENST00000429623 299 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 MTND2P5-201ENST00000432656 1006 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 OFD1P3Y-201ENST00000453312 783 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 PNPLA4P1-201ENST00000458328 305 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AL133162.1-201ENST00000463228 453 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 RPS4XP10-201ENST00000465034 731 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC021205.2-201ENST00000480069 347 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 HMGN1P15-201ENST00000513870 295 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC022483.1-201ENST00000514020 567 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AC104417.1-201ENST00000523974 751 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 TRAV37-201ENST00000553906 342 ntBASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF540Q8NDQ6 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms