Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC034268.2-201ENST00000571784 482 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC055876.5-201ENST00000605667 259 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-87P-201ENST00000607561 108 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 USP12-203ENST00000620323 349 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 MIR6500-201ENST00000622700 86 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC000374.1-201ENST00000434698 1745 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-845P-201ENST00000362578 103 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RNA5SP124-201ENST00000362739 110 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-767P-201ENST00000384132 107 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 SNORD96B-201ENST00000386148 79 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 HMGB1P17-201ENST00000403495 628 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RNU2-8P-201ENST00000410727 190 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC005534.2-201ENST00000431047 433 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 GOT2P5-201ENST00000433995 546 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RPS26P2-201ENST00000440331 348 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC079804.1-201ENST00000461922 436 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 UBA52P3-201ENST00000491303 382 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC104164.2-201ENST00000496953 495 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC108471.1-201ENST00000513977 287 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC007621.1-201ENST00000604544 437 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AL136363.1-201ENST00000605349 337 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AC074140.1-201ENST00000621617 208 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AP006248.2-201ENST00000623309 592 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.55□□□□□ -1.52
USHBP1Q8N6Y0 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 SNORA71.3-201ENST00000362582 128 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RNU4-79P-201ENST00000362764 141 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RNU1-44P-201ENST00000384453 163 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-225P-201ENST00000384613 103 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MTND3P17-201ENST00000416968 344 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 EIF1P3-201ENST00000423841 334 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 ATP5HP2-201ENST00000433885 485 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RPL7P54-201ENST00000438336 674 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RNU7-136P-201ENST00000458819 69 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC034159.1-201ENST00000513885 583 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 IFITM8P-201ENST00000522529 394 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AL389895.1-201ENST00000554127 252 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC007424.1-203ENST00000554613 687 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 HSPE1P5-201ENST00000561489 272 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC107954.1-201ENST00000565906 727 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AC010928.3-201ENST00000587712 541 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 HMGB2P1-201ENST00000591146 634 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AL606490.9-201ENST00000603331 271 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MIR98-201ENST00000606724 119 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.812-201ENST00000610788 101 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.784-201ENST00000613803 101 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.787-201ENST00000616522 101 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms