Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CBX3P3-201ENST00000508108 532 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 MTND4LP22-201ENST00000508209 276 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 FCF1P8-201ENST00000510322 597 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC008489.1-201ENST00000524271 483 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 LRRC6P1-201ENST00000532188 885 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 UBE2NP1-201ENST00000545592 458 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC125611.1-201ENST00000549563 229 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 MED28P6-201ENST00000558776 231 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AL390838.2-201ENST00000602394 274 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AL022099.1-201ENST00000604551 712 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AL031176.1-201ENST00000604554 466 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC093673.2-201ENST00000609674 331 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC005332.6-201ENST00000613178 446 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC010975.3-201ENST00000618727 978 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 OR6C71P-202ENST00000641886 1107 ntBASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
HDDC3Q8N4P3 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC004944.1-201ENST00000517807 3059 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 RPL23AP57-201ENST00000332361 466 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 RNU6-1155P-201ENST00000363554 107 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 FAT1P1-201ENST00000406588 507 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 RPS15AP38-201ENST00000413110 372 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 RPL30P2-201ENST00000414021 291 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 OSTCP5-201ENST00000425293 453 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 MUPP-201ENST00000438111 566 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 MTCYBP11-201ENST00000447254 1109 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 OFD1P3Y-201ENST00000453312 783 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 USP9YP34-201ENST00000453983 808 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC104308.1-201ENST00000454621 333 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 SUMO2P5-201ENST00000506790 245 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AP001636.2-201ENST00000525517 696 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AP005205.1-201ENST00000563503 508 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC099489.2-201ENST00000574976 260 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AL451007.1-201ENST00000595491 289 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC006386.2-201ENST00000624491 75 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC012005.1-201ENST00000624575 75 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 MFSD8-233ENST00000641482 4860 ntBASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HDDC3Q8N4P3 AC107982.1-201ENST00000507171 1300 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 OR4G11P-202ENST00000642116 1414 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC073073.2-201ENST00000609827 2578 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RNU5D-1-201ENST00000363299 116 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RNU6-224P-201ENST00000384055 107 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 Y_RNA.510-201ENST00000384511 114 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPS3AP26-201ENST00000398259 784 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 MTCO1P56-201ENST00000401674 224 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RN7SKP111-201ENST00000410349 271 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RNU6-1077P-201ENST00000410506 102 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPL7P30-201ENST00000420888 709 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPL39P6-201ENST00000448289 150 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC112492.1-201ENST00000449607 712 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPL36AP33-201ENST00000450395 310 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPL27AP5-201ENST00000469428 449 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 RPL23AP44-201ENST00000482216 473 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms