Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 H3F3AP1-201ENST00000559984 334 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 MRPL45P2-203ENST00000573318 473 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC024614.2-201ENST00000577584 372 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LRRC37A5P-203ENST00000580181 585 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC023575.1-201ENST00000580510 358 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC009831.4-201ENST00000620744 325 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC093591.3-201ENST00000634516 308 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC008669.1-201ENST00000565823 2178 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC103710.2-202ENST00000641454 2853 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 RNA5SP72-201ENST00000364442 117 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 RNA5SP283-201ENST00000365604 119 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 LINC01881-201ENST00000416103 412 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 TRBV24OR9-2-201ENST00000416632 435 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 CHEK2P5-201ENST00000423877 246 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AL513321.1-201ENST00000441175 761 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AL591719.1-201ENST00000444669 744 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 RPL7P12-201ENST00000446719 750 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 Z75741.1-201ENST00000446793 314 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 PMCHL2-203ENST00000457791 237 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 RPL7P18-201ENST00000478965 734 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC104109.1-201ENST00000498563 436 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC020699.1-201ENST00000505161 445 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 FABP5P6-201ENST00000510588 409 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AK6-204ENST00000512561 587 ntTSL 5 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC068339.2-201ENST00000534395 618 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC139103.1-201ENST00000534696 1030 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 OR8R1P-201ENST00000543943 764 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 DEFB122-202ENST00000569013 197 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC022662.1-201ENST00000580252 331 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AL713998.2-201ENST00000604538 1198 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 OR10AB1P-201ENST00000609613 938 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 MIR6889-201ENST00000613185 59 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC020658.4-201ENST00000613987 684 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 MIR1910-201ENST00000636955 80 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC119674.1-212ENST00000641155 993 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC011477.1-204ENST00000623416 1325 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AP006437.1-201ENST00000641440 3685 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC1.31□□□□□ -2.2
LINC00643Q86TS7 AC024341.1-201ENST00000526444 1552 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AL356057.3-201ENST00000402607 340 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 RNU6-920P-201ENST00000410926 92 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 PGBD4P6-201ENST00000421501 610 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AL356867.1-201ENST00000429623 299 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 HSPD1P21-201ENST00000436541 245 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 Z77249.1-201ENST00000444622 1175 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 RPL23AP42-201ENST00000471152 471 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC093663.2-201ENST00000484625 313 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC090568.1-201ENST00000509499 856 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 SNORA31.18-201ENST00000517043 134 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC010306.1-201ENST00000523223 1117 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 GTF2IP22-201ENST00000554443 182 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC011445.2-201ENST00000599274 173 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 HSPE1P7-201ENST00000604681 321 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AL355297.2-201ENST00000604792 129 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 AC004908.2-201ENST00000609090 574 ntBASIC1.3□□□□□ -2.2
LINC00643Q86TS7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms