Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC093519.1-201ENST00000566109 298 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC068790.5-201ENST00000602741 355 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC106900.2-201ENST00000604994 317 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC040896.1-201ENST00000613819 479 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC079684.1-201ENST00000621405 437 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 C2orf27A-204ENST00000623058 969 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AP006248.2-201ENST00000623309 592 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 MIR1302-1-201ENST00000637932 143 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP39Q53GS9 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.69□□□□□ -1.66
USP39Q53GS9 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP39Q53GS9 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC126323.6-202ENST00000568092 3511 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AL136164.3-201ENST00000624429 3978 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 Y_RNA.431-201ENST00000384086 102 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 SNORA75.4-201ENST00000391278 119 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AL592291.1-201ENST00000403830 352 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 U3.35-201ENST00000408405 208 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 MTCO2P5-201ENST00000422621 426 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.68□□□□□ -1.66
USP39Q53GS9 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 RPL17P49-201ENST00000443728 411 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC106872.3-201ENST00000495104 446 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 RN7SKP13-201ENST00000515933 244 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 SNORA31.9-201ENST00000516429 84 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 IGLVIV-65-201ENST00000517313 360 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 TRMT10BP1-201ENST00000519377 943 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AP003181.2-201ENST00000528941 181 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC055876.1-202ENST00000567053 138 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC090312.2-201ENST00000582687 378 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.68□□□□□ -1.66
USP39Q53GS9 MIR3138-201ENST00000585238 82 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AC011477.5-201ENST00000586571 259 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC123768.4-201ENST00000616244 701 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 AC138649.5-201ENST00000637456 137 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.68□□□□□ -1.66
USP39Q53GS9 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.68□□□□□ -1.66
USP39Q53GS9 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.68□□□□□ -1.66
USP39Q53GS9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.68□□□□□ -1.66
USP39Q53GS9 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP39Q53GS9 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.67□□□□□ -1.66
USP39Q53GS9 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 RNA5SP515-201ENST00000364570 118 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 Y_RNA.381-201ENST00000365666 102 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 RN7SKP266-201ENST00000410232 287 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC073264.1-201ENST00000411508 416 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 GSTM3P2-201ENST00000412746 530 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AL353678.1-201ENST00000422735 741 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 GPM6BP2-201ENST00000432046 144 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 RPEP2-201ENST00000432149 701 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC024082.2-201ENST00000434771 238 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 MRPL48P1-201ENST00000445390 636 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 GPM6BP1-201ENST00000446387 144 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 NUTF2P3-201ENST00000448540 384 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AL162388.1-201ENST00000450912 352 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 HMGB3P21-201ENST00000452483 547 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC099563.1-201ENST00000456086 418 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AL445433.1-201ENST00000457507 257 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC017015.1-201ENST00000477387 286 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms