Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR3158-1-201ENST00000583596 81 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MIR4506-201ENST00000584693 77 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 DNAJC19P3-201ENST00000594491 331 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC055876.5-201ENST00000605667 259 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 uc_338.25-201ENST00000613756 156 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC009464.1-201ENST00000615731 469 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MAPK10-362ENST00000641864 4484 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MTND5P24-201ENST00000438892 1767 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL354719.1-201ENST00000406535 843 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 snoU109.4-201ENST00000458953 143 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC093278.1-201ENST00000494700 600 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC112206.4-201ENST00000515142 405 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 RNA5SP385-201ENST00000515947 110 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 SNORA67.7-201ENST00000516664 135 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 RNU6-1261P-201ENST00000517194 104 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 OR4H12P-201ENST00000556269 907 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 MIR2682-201ENST00000580305 110 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 ZNF415P1-201ENST00000582279 1166 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL451074.6-201ENST00000608512 729 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AL360181.4-201ENST00000621752 134 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC095031.1-201ENST00000623685 672 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 AC106858.1-201ENST00000637497 429 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 MKKS-204ENST00000639674 192 ntBASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC40Q4G0X9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AL049781.1-201ENST00000623195 3585 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 SNORA11-201ENST00000408789 128 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC099677.1-201ENST00000420575 175 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 RPL7P46-201ENST00000425129 740 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 DUTP6-201ENST00000425573 462 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 GTF2IP7-202ENST00000436677 309 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 OR4G11P-201ENST00000492842 939 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC010460.2-201ENST00000509054 677 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC093752.1-206ENST00000511823 336 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 RPL21P12-201ENST00000559810 515 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AC073387.2-201ENST00000604797 784 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AL355810.1-201ENST00000614629 552 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 AP005901.5-201ENST00000545779 1796 ntBASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC40Q4G0X9 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 RNU6-1074P-201ENST00000383995 104 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 SNORD51-201ENST00000384320 80 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 MIR670-201ENST00000390142 98 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 RNU6-1000P-201ENST00000391066 106 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 RNU1-101P-201ENST00000391171 127 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 SNORA48.7-201ENST00000391302 135 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL159987.2-201ENST00000432754 307 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC244505.4-201ENST00000434905 287 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 SSXP5-201ENST00000443473 287 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 HMGB3P6-201ENST00000444896 598 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms