Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.03□□□□□ -2.09
CHD9Q3L8U1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 RAC1P3-201ENST00000416129 580 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC234782.4-201ENST00000417646 1048 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC027124.2-201ENST00000428249 105 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 SNORA4-201ENST00000584302 138 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AL160237.3-201ENST00000604114 1013 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 VN1R7P-201ENST00000619242 903 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 Y_RNA.327-201ENST00000365201 102 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 RPS29P12-201ENST00000460178 152 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 HMGN2P47-201ENST00000559378 272 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 MIR6779-201ENST00000617283 64 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC2.02□□□□□ -2.09
CHD9Q3L8U1 AC244517.12-201ENST00000623581 663 ntBASIC2.02□□□□□ -2.09
CHD9Q3L8U1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC244505.4-201ENST00000434905 287 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 SSXP5-201ENST00000443473 287 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 OR1S1-201ENST00000624470 978 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC104332.2-201ENST00000429959 156 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 POU5F1P7-201ENST00000508759 541 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 RNU6ATAC39P-201ENST00000516309 149 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 RNA5SP480-201ENST00000516840 109 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC023043.3-201ENST00000593113 385 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC068790.3-201ENST00000602988 553 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AP006248.2-201ENST00000623309 592 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CHD9Q3L8U1 AC107021.2-201ENST00000567714 2095 ntBASIC2.01□□□□□ -2.09
CHD9Q3L8U1 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2□□□□□ -2.09
CHD9Q3L8U1 VN1R31P-201ENST00000417498 730 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC2□□□□□ -2.09
CHD9Q3L8U1 SSXP1-201ENST00000453640 473 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 CDC42P1-201ENST00000456658 548 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 NAMPTP2-201ENST00000505629 1115 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2□□□□□ -2.09
CHD9Q3L8U1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2□□□□□ -2.09
CHD9Q3L8U1 HMGN2P28-201ENST00000606102 262 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC012360.2-201ENST00000609349 391 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2□□□□□ -2.09
CHD9Q3L8U1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CHD9Q3L8U1 MIR613-201ENST00000385248 95 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 GSTA12P-201ENST00000402398 508 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 SNORD88.1-201ENST00000408684 91 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC009969.1-201ENST00000438726 172 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 GSTA11P-201ENST00000452866 669 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 CREM-226ENST00000469949 721 ntTSL 3 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AC092185.1-201ENST00000491371 97 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 RPS26P24-201ENST00000497656 331 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AP000787.2-201ENST00000604432 568 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC007620.3-201ENST00000608131 497 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC2□□□□□ -2.09
CHD9Q3L8U1 API5P2-201ENST00000397055 1498 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
CHD9Q3L8U1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2□□□□□ -2.09
CHD9Q3L8U1 AC245517.2-201ENST00000442890 346 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC092798.1-201ENST00000458542 409 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 RAC1P5-201ENST00000512182 576 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 AC013562.2-201ENST00000611632 603 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 MIR6895-201ENST00000613497 78 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 MIR6504-201ENST00000613520 61 ntBASIC2□□□□□ -2.09
CHD9Q3L8U1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2□□□□□ -2.09
CHD9Q3L8U1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 RPL5P13-201ENST00000462840 709 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 CBX3P4-201ENST00000538909 354 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 PSMA6P4-201ENST00000603247 718 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 SETP10-201ENST00000424368 814 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 YWHAZP7-201ENST00000436906 631 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 RPL23AP16-201ENST00000441715 421 ntBASIC1.99□□□□□ -2.09
CHD9Q3L8U1 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.99□□□□□ -2.09
CHD9Q3L8U1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms