Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 UBTFL10-201ENST00000528532 562 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD3Q12873 HSPE1P20-201ENST00000538133 289 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AL133271.1-201ENST00000538229 291 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.2□□□□□ -2.06
CHD3Q12873 MTND4LP24-201ENST00000572277 291 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AC007621.1-201ENST00000604544 437 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AC007938.3-201ENST00000604965 623 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AP003117.2-201ENST00000606010 545 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 SNORA35B-201ENST00000607417 129 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 MIR7973-1-201ENST00000614683 76 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD3Q12873 FO624990.1-201ENST00000636373 85 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 CRYM-AS1-204ENST00000637983 556 ntBASIC2.2□□□□□ -2.06
CHD3Q12873 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CHD3Q12873 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD3Q12873 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CHD3Q12873 MIR607-201ENST00000385241 96 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 RPS6P14-201ENST00000425165 719 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 CALM1P2-201ENST00000452941 448 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 AC090515.1-201ENST00000465295 476 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 RPL21P99-201ENST00000480369 423 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.19□□□□□ -2.06
CHD3Q12873 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.19□□□□□ -2.06
CHD3Q12873 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.19□□□□□ -2.06
CHD3Q12873 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.19□□□□□ -2.06
CHD3Q12873 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD3Q12873 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.19□□□□□ -2.06
CHD3Q12873 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD3Q12873 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CHD3Q12873 AL137847.3-201ENST00000611521 109 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 AC104237.2-201ENST00000612456 443 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 AP003072.4-201ENST00000624580 310 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 MTCO1P9-201ENST00000505577 1534 ntBASIC2.19□□□□□ -2.06
CHD3Q12873 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHD3Q12873 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHD3Q12873 SNORA7.2-201ENST00000364446 145 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 DEFA7P-201ENST00000382676 285 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 SNORA36C-201ENST00000384289 132 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
CHD3Q12873 RNU6-482P-201ENST00000391068 107 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 RPS20P25-201ENST00000412447 352 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 FCF1P1-201ENST00000432690 571 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC022884.3-201ENST00000579571 248 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 MIR5092-201ENST00000583139 88 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.18□□□□□ -2.06
CHD3Q12873 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CHD3Q12873 ZNF72P-201ENST00000425869 1908 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AC016717.2-201ENST00000609089 5141 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 FRG1BP-201ENST00000278882 761 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 EIF5P1-201ENST00000400019 1231 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 MTATP6P11-201ENST00000428071 670 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 RPL37P6-202ENST00000464216 403 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.18□□□□□ -2.06
CHD3Q12873 OR6C73P-201ENST00000546432 358 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 SETP2-201ENST00000553886 926 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AC044913.1-201ENST00000557200 430 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD3Q12873 PCNAP1-202ENST00000595299 752 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.18□□□□□ -2.06
CHD3Q12873 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.18□□□□□ -2.06
CHD3Q12873 AC026634.1-201ENST00000634369 198 ntBASIC2.18□□□□□ -2.06
CHD3Q12873 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD3Q12873 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CHD3Q12873 RPL21P75-201ENST00000396599 483 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RPL21P28-201ENST00000401418 483 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AL592114.1-201ENST00000403842 483 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RNU4-53P-201ENST00000410828 140 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RNA5SP498-201ENST00000411342 120 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC080125.1-201ENST00000414888 684 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 BX682237.1-201ENST00000415016 335 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 SSXP9-201ENST00000417503 292 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CHD3Q12873 RPL21P39-201ENST00000463605 483 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC011979.1-201ENST00000472300 483 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RBM43P1-201ENST00000476891 1081 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RPL21P93-201ENST00000480465 489 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC233702.1-201ENST00000482905 502 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC093591.1-201ENST00000491435 481 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RPL21P16-201ENST00000495531 483 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms