Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 AP001922.4-201ENST00000526967 290 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.94□□□□□ -1.62
RNF4P78317 OR10G5P-201ENST00000532733 358 ntBASIC4.94□□□□□ -1.62
RNF4P78317 CR383656.7-201ENST00000548164 174 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AL352979.3-201ENST00000553515 247 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AL355836.1-201ENST00000555951 870 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.94□□□□□ -1.62
RNF4P78317 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.94□□□□□ -1.62
RNF4P78317 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 MIR3672-201ENST00000584290 82 ntBASIC4.94□□□□□ -1.62
RNF4P78317 MIR7853-201ENST00000584820 132 ntBASIC4.94□□□□□ -1.62
RNF4P78317 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.94□□□□□ -1.62
RNF4P78317 AC093838.1-201ENST00000613014 469 ntBASIC4.94□□□□□ -1.62
RNF4P78317 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
RNF4P78317 AC121333.1-201ENST00000567488 2709 ntBASIC4.94□□□□□ -1.62
RNF4P78317 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
RNF4P78317 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
RNF4P78317 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.93□□□□□ -1.62
RNF4P78317 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
RNF4P78317 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.93□□□□□ -1.62
RNF4P78317 GABPAP-201ENST00000419271 1356 ntBASIC4.93□□□□□ -1.62
RNF4P78317 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.93□□□□□ -1.62
RNF4P78317 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
RNF4P78317 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
RNF4P78317 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.93□□□□□ -1.62
RNF4P78317 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.93□□□□□ -1.62
RNF4P78317 U3.7-201ENST00000363668 216 ntBASIC4.93□□□□□ -1.62
RNF4P78317 RNU6-960P-201ENST00000364056 120 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.93□□□□□ -1.62
RNF4P78317 AL139396.1-201ENST00000421137 167 ntBASIC4.93□□□□□ -1.62
RNF4P78317 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 RAC1P6-201ENST00000423911 575 ntBASIC4.93□□□□□ -1.62
RNF4P78317 PSMA2P3-201ENST00000429685 675 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.93□□□□□ -1.62
RNF4P78317 AL451139.1-201ENST00000434718 346 ntBASIC4.93□□□□□ -1.62
RNF4P78317 PPIAP3-201ENST00000450588 505 ntBASIC4.93□□□□□ -1.62
RNF4P78317 RPL30P15-201ENST00000457129 321 ntBASIC4.93□□□□□ -1.62
RNF4P78317 RPL21P8-201ENST00000465083 535 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AC072052.1-201ENST00000496556 306 ntBASIC4.93□□□□□ -1.62
RNF4P78317 HIGD1AP14-201ENST00000507617 282 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.93□□□□□ -1.62
RNF4P78317 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.93□□□□□ -1.62
RNF4P78317 SNRPGP18-201ENST00000553000 214 ntBASIC4.93□□□□□ -1.62
RNF4P78317 OR11H5P-201ENST00000554039 926 ntBASIC4.93□□□□□ -1.62
RNF4P78317 MIR4716-201ENST00000579628 84 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.93□□□□□ -1.62
RNF4P78317 AC108738.1-201ENST00000603703 237 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AL031176.1-201ENST00000604554 466 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AC010205.1-201ENST00000616668 449 ntBASIC4.93□□□□□ -1.62
RNF4P78317 AL161637.1-201ENST00000622380 412 ntBASIC4.93□□□□□ -1.62
RNF4P78317 uc_338.22-201ENST00000622722 187 ntBASIC4.93□□□□□ -1.62
RNF4P78317 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
RNF4P78317 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
RNF4P78317 EXOC5P1-201ENST00000510543 1969 ntBASIC4.93□□□□□ -1.62
RNF4P78317 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
RNF4P78317 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
RNF4P78317 AC104118.1-201ENST00000607625 1589 ntBASIC4.92□□□□□ -1.62
RNF4P78317 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.92□□□□□ -1.62
RNF4P78317 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.92□□□□□ -1.62
RNF4P78317 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
RNF4P78317 U3.2-201ENST00000362981 210 ntBASIC4.92□□□□□ -1.62
RNF4P78317 RNU6-263P-201ENST00000363811 107 ntBASIC4.92□□□□□ -1.62
RNF4P78317 Y_RNA.187-201ENST00000363918 113 ntBASIC4.92□□□□□ -1.62
RNF4P78317 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
RNF4P78317 SNORA70.6-201ENST00000383934 134 ntBASIC4.92□□□□□ -1.62
RNF4P78317 RNA5SP219-201ENST00000390940 113 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AL356057.3-201ENST00000402607 340 ntBASIC4.92□□□□□ -1.62
RNF4P78317 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.92□□□□□ -1.62
RNF4P78317 AC008065.1-201ENST00000428525 348 ntBASIC4.92□□□□□ -1.62
RNF4P78317 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AL353597.2-202ENST00000434901 373 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AC234775.1-201ENST00000454247 670 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AC079168.1-201ENST00000458741 345 ntBASIC4.92□□□□□ -1.62
RNF4P78317 SCARNA18-201ENST00000459004 134 ntBASIC4.92□□□□□ -1.62
RNF4P78317 HMGB1P25-201ENST00000468402 607 ntBASIC4.92□□□□□ -1.62
RNF4P78317 NIP7P2-201ENST00000485801 544 ntBASIC4.92□□□□□ -1.62
RNF4P78317 RPS27P27-201ENST00000498779 255 ntBASIC4.92□□□□□ -1.62
RNF4P78317 RPS4XP20-201ENST00000505751 772 ntBASIC4.92□□□□□ -1.62
RNF4P78317 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.92□□□□□ -1.62
RNF4P78317 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms