Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORA35B-201ENST00000607417 129 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC008759.3-201ENST00000613300 508 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC073534.2-201ENST00000620377 381 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A4P53420 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.96□□□□□ -1.94
COL4A4P53420 CR382285.2-201ENST00000624662 1495 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC092079.1-201ENST00000558620 1985 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
COL4A4P53420 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.96□□□□□ -1.94
COL4A4P53420 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC110792.3-201ENST00000595906 1614 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 RNU6-906P-201ENST00000384700 70 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AL356057.3-201ENST00000402607 340 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.95□□□□□ -1.94
COL4A4P53420 NANOGP5-201ENST00000424456 877 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 BMI1P1-201ENST00000445879 941 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 CABYRP1-201ENST00000465493 1045 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 ATG10-AS1-201ENST00000504846 648 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC2.95□□□□□ -1.94
COL4A4P53420 RNU6-311P-201ENST00000516224 102 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 OSBPL9P3-201ENST00000534523 595 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 MTATP6P3-201ENST00000581686 676 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC018638.7-201ENST00000605836 1114 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC006840.1-201ENST00000623069 542 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 LINC00216-201ENST00000623548 1126 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC098679.5-201ENST00000624394 571 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC241585.2-209ENST00000638217 143 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC025263.3-201ENST00000622965 1396 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 AL356473.1-201ENST00000406203 1408 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
COL4A4P53420 Y_RNA.194-201ENST00000363985 102 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 RNU6-670P-201ENST00000364312 104 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 SNORA27.3-201ENST00000364937 134 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 SNORD51.1-201ENST00000365405 77 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 RNU6-152P-201ENST00000384037 107 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 MIR1302-8-201ENST00000408342 128 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AL451074.5-201ENST00000415894 435 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 ZNF965P-201ENST00000432501 817 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 OR10R1P-201ENST00000441524 1141 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.95□□□□□ -1.94
COL4A4P53420 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A4P53420 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 RPL23AP23-201ENST00000452590 471 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A4P53420 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC2.95□□□□□ -1.94
COL4A4P53420 MTCYBP37-201ENST00000510642 1133 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC117532.1-201ENST00000514638 323 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 RNA5SP320-201ENST00000516263 124 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AP001646.1-201ENST00000527936 915 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 CKS1BP1-201ENST00000555221 240 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC009163.5-201ENST00000575421 637 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC026741.1-201ENST00000605892 482 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC004492.1-201ENST00000607036 742 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AL357078.3-201ENST00000607528 618 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC010338.1-201ENST00000621823 717 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
COL4A4P53420 AC084035.1-201ENST00000634543 607 ntBASIC2.95□□□□□ -1.94
COL4A4P53420 OR11H5P-202ENST00000641612 1325 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 MAPK10-322ENST00000641485 4530 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 RNU6-386P-201ENST00000362650 107 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 MIR3074-201ENST00000384885 81 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.94□□□□□ -1.94
COL4A4P53420 UBE2V1P9-201ENST00000414760 368 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 TIMM9P2-201ENST00000419324 266 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 RPS15AP6-201ENST00000420703 385 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 MTND4LP11-201ENST00000422184 280 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 BX276092.3-201ENST00000424182 230 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC2.94□□□□□ -1.94
COL4A4P53420 AC234781.2-201ENST00000426370 994 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 MTND2P20-201ENST00000440805 661 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.94□□□□□ -1.94
COL4A4P53420 OR6C72P-201ENST00000451403 892 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms