Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AP001350.1-201ENST00000601906 1524 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC027287.1-201ENST00000553115 1453 ntBASIC5.35□□□□□ -1.55
LIG3P49916 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
LIG3P49916 U3.2-201ENST00000362981 210 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RNU5E-6P-201ENST00000365574 115 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RNU11-4P-201ENST00000391149 133 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RNU4-34P-201ENST00000410431 124 ntBASIC5.35□□□□□ -1.55
LIG3P49916 E2F6P2-201ENST00000420708 748 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.35□□□□□ -1.55
LIG3P49916 AC018630.2-202ENST00000422992 927 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC093655.2-201ENST00000425735 631 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG3P49916 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG3P49916 BRK1P2-201ENST00000442875 223 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RPL21P133-201ENST00000443666 476 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC010655.1-201ENST00000449336 292 ntBASIC5.35□□□□□ -1.55
LIG3P49916 PPIAP3-201ENST00000450588 505 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AL162395.1-201ENST00000457882 422 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RN7SL727P-201ENST00000482164 296 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC096576.1-201ENST00000489014 359 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG3P49916 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG3P49916 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG3P49916 MTND5P5-201ENST00000503764 376 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 KLHL2P1-201ENST00000508691 521 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 RN7SKP13-201ENST00000515933 244 ntBASIC5.35□□□□□ -1.55
LIG3P49916 MTND4P7-201ENST00000523876 130 ntBASIC5.35□□□□□ -1.55
LIG3P49916 OR10G5P-201ENST00000532733 358 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG3P49916 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG3P49916 RN7SL356P-201ENST00000582228 248 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG3P49916 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AC126915.2-201ENST00000610957 190 ntBASIC5.35□□□□□ -1.55
LIG3P49916 AC093838.1-201ENST00000613014 469 ntBASIC5.35□□□□□ -1.55
LIG3P49916 MIR6719-201ENST00000622428 87 ntBASIC5.35□□□□□ -1.55
LIG3P49916 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG3P49916 AL133216.2-202ENST00000634512 349 ntBASIC5.35□□□□□ -1.55
LIG3P49916 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG3P49916 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIG3P49916 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG3P49916 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIG3P49916 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LIG3P49916 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
LIG3P49916 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
LIG3P49916 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIG3P49916 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIG3P49916 U3.12-201ENST00000364498 214 ntBASIC5.34□□□□□ -1.55
LIG3P49916 Y_RNA.259-201ENST00000364619 101 ntBASIC5.34□□□□□ -1.55
LIG3P49916 RNU6-637P-201ENST00000384050 107 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MIR105-1-201ENST00000385222 81 ntBASIC5.34□□□□□ -1.55
LIG3P49916 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LIG3P49916 RNU6-821P-201ENST00000390995 107 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIG3P49916 AL109755.1-201ENST00000401791 649 ntBASIC5.34□□□□□ -1.55
LIG3P49916 RNU2-47P-201ENST00000410649 186 ntBASIC5.34□□□□□ -1.55
LIG3P49916 DPPA2P3-201ENST00000411853 655 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MTCO2P27-201ENST00000420740 428 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MTND2P23-201ENST00000422990 651 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.34□□□□□ -1.55
LIG3P49916 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.34□□□□□ -1.55
LIG3P49916 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.34□□□□□ -1.55
LIG3P49916 ATP5HP2-201ENST00000433885 485 ntBASIC5.34□□□□□ -1.55
LIG3P49916 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.34□□□□□ -1.55
LIG3P49916 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.34□□□□□ -1.55
LIG3P49916 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LIG3P49916 AC005532.2-201ENST00000467154 373 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MTND4P17-201ENST00000470444 350 ntBASIC5.34□□□□□ -1.55
LIG3P49916 RN7SL222P-201ENST00000476452 299 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC058823.1-201ENST00000485315 474 ntBASIC5.34□□□□□ -1.55
LIG3P49916 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.34□□□□□ -1.55
LIG3P49916 AC008953.1-201ENST00000497334 318 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC5.34□□□□□ -1.55
LIG3P49916 RNU6-1170P-201ENST00000515974 106 ntBASIC5.34□□□□□ -1.55
LIG3P49916 RNA5SP373-201ENST00000517271 95 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC027308.1-201ENST00000517993 110 ntBASIC5.34□□□□□ -1.55
LIG3P49916 PTP4A1P6-201ENST00000531034 478 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.34□□□□□ -1.55
LIG3P49916 CR383656.7-201ENST00000548164 174 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.34□□□□□ -1.55
LIG3P49916 AC093249.1-201ENST00000567049 203 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.34□□□□□ -1.55
LIG3P49916 MIR4293-201ENST00000584305 78 ntBASIC5.34□□□□□ -1.55
LIG3P49916 LLPHP1-201ENST00000603571 367 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AL031176.1-201ENST00000604554 466 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AL360085.1-201ENST00000604713 532 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MIR8069-1-201ENST00000616627 86 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MIR6839-201ENST00000620425 113 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MIR8069-2-201ENST00000621412 86 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC011155.2-201ENST00000623202 216 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC025034.2-201ENST00000623264 286 ntBASIC5.34□□□□□ -1.55
LIG3P49916 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms