Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ARL2BPP10-201ENST00000446487 531 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 EPS15P1-201ENST00000448836 336 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC109327.1-201ENST00000471666 403 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AC021382.1-201ENST00000483523 359 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AC068305.1-201ENST00000497406 726 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC021146.1-201ENST00000511202 716 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX2-1P43699 FABP5P5-201ENST00000515537 406 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 RNU6-1073P-201ENST00000517182 106 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 RPL12P22-201ENST00000519073 490 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC084783.1-201ENST00000565846 910 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX2-1P43699 MIR3690-201ENST00000580266 75 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 MIR544B-201ENST00000582372 78 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX2-1P43699 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC100793.4-201ENST00000613683 429 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 MIR6130-201ENST00000619419 109 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AC015967.1-201ENST00000619893 476 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AL445363.3-201ENST00000623080 671 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 AL356266.1-201ENST00000623311 483 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX2-1P43699 AC006504.1-201ENST00000562493 3666 ntBASIC3.31□□□□□ -1.88
NKX2-1P43699 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
NKX2-1P43699 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX2-1P43699 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX2-1P43699 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 FRG1BP-201ENST00000278882 761 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 MIR423-201ENST00000362201 94 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 RNU1-14P-201ENST00000362759 152 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 RNU6-1074P-201ENST00000383995 104 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 RNU6-1207P-201ENST00000384343 107 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 HSPE1P26-201ENST00000405341 275 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 RN7SKP235-201ENST00000410662 305 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 CDK8P2-201ENST00000415020 547 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC119751.6-201ENST00000416712 186 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 RPL21P32-201ENST00000419877 477 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC006366.1-201ENST00000422002 759 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AL445669.1-201ENST00000426743 755 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 LSM1P1-201ENST00000438629 273 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 THAP5P1-201ENST00000439089 262 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.3□□□□□ -1.88
NKX2-1P43699 SSXP1-201ENST00000453640 473 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 ANP32BP2-201ENST00000454525 545 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 NDUFA12P1-201ENST00000455914 406 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 snoU13.4-201ENST00000458916 104 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 VN1R17P-201ENST00000472048 1090 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 TMED11P-201ENST00000479478 690 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.3□□□□□ -1.88
NKX2-1P43699 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC079140.3-201ENST00000511111 550 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 SNORA70.14-201ENST00000516205 110 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC060788.1-201ENST00000521318 469 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC022968.1-201ENST00000567372 442 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC009101.1-201ENST00000568135 242 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.3□□□□□ -1.88
NKX2-1P43699 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 FAM27D1-201ENST00000612308 341 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AL590099.1-201ENST00000615276 138 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX2-1P43699 AL353748.2-201ENST00000622148 471 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 AC092656.1-203ENST00000624134 423 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 AC090582.1-201ENST00000636321 199 ntBASIC3.3□□□□□ -1.88
NKX2-1P43699 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NKX2-1P43699 OTUD4P1-201ENST00000237841 3067 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms