Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AL031985.2-201ENST00000600955 480 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC091946.2-201ENST00000606105 291 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AL442067.2-201ENST00000614033 363 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AL355365.1-201ENST00000616480 294 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC022960.3-201ENST00000619794 441 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 MKKS-204ENST00000639674 192 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN4P29074 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
PTPN4P29074 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 NUP58P1-201ENST00000502546 1738 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.39□□□□□ -1.87
PTPN4P29074 SNORD82-201ENST00000365530 70 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PTPN4P29074 SNORD65.1-201ENST00000390889 71 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AL591034.1-201ENST00000407447 340 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.39□□□□□ -1.87
PTPN4P29074 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 AC007435.1-201ENST00000421086 415 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 RPL31P54-201ENST00000429803 370 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.39□□□□□ -1.87
PTPN4P29074 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 AC079776.3-201ENST00000450665 370 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN4P29074 snoU109.4-201ENST00000458953 143 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 PABPC1P3-201ENST00000469174 459 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 RN7SL601P-201ENST00000471221 293 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 UBE2V1P12-201ENST00000503954 474 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 HSPD1P15-201ENST00000505573 1122 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 TPT1P8-201ENST00000510120 555 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 RNU6-1261P-201ENST00000517194 104 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.39□□□□□ -1.87
PTPN4P29074 NCAPGP2-201ENST00000557911 754 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 GTF2IP8-201ENST00000560687 584 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN4P29074 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN4P29074 MIR3200-201ENST00000580767 85 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 AL109653.1-201ENST00000603091 248 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 XIAPP1-201ENST00000603162 600 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 PART1_2.1-201ENST00000612397 250 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 CYP3A51P-201ENST00000633513 256 ntBASIC3.39□□□□□ -1.87
PTPN4P29074 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN4P29074 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PTPN4P29074 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.38□□□□□ -1.87
PTPN4P29074 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
PTPN4P29074 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTPN4P29074 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
PTPN4P29074 AC006960.1-201ENST00000419980 153 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC099677.1-201ENST00000420575 175 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 RAC1P8-201ENST00000427086 527 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 SNRPEP4-201ENST00000435815 279 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 RPL23AP74-201ENST00000437246 471 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC127537.2-201ENST00000439258 465 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 HMGB3P11-201ENST00000440127 604 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.38□□□□□ -1.87
PTPN4P29074 RPL17P49-201ENST00000443728 411 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 RBMY2UP-201ENST00000453474 324 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC023598.1-201ENST00000472521 361 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 MLLT10P2-201ENST00000506434 249 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC113420.1-201ENST00000507903 571 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 MTCYBP16-201ENST00000509187 1129 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.38□□□□□ -1.87
PTPN4P29074 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.38□□□□□ -1.87
PTPN4P29074 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.38□□□□□ -1.87
PTPN4P29074 AC087808.1-201ENST00000520501 361 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.38□□□□□ -1.87
PTPN4P29074 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PTPN4P29074 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.38□□□□□ -1.87
PTPN4P29074 MIR4509-3-201ENST00000578671 94 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 MIR4509-2-201ENST00000583920 94 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 BNIP3P24-201ENST00000593398 557 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.38□□□□□ -1.87
PTPN4P29074 AL160281.1-201ENST00000605307 311 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AL365400.2-201ENST00000605604 902 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC024257.5-201ENST00000612739 531 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTPN4P29074 MIR4509-1-201ENST00000618224 94 ntBASIC3.38□□□□□ -1.87
PTPN4P29074 AC010975.3-201ENST00000618727 978 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms