Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.28□□□□□ -2.2
APOBP04114 AC233279.1-201ENST00000455300 423 ntBASIC1.28□□□□□ -2.2
APOBP04114 DNAJC19P9-201ENST00000555084 351 ntBASIC1.28□□□□□ -2.2
APOBP04114 AC106730.3-201ENST00000624568 641 ntBASIC1.28□□□□□ -2.2
APOBP04114 AL136964.1-201ENST00000622038 2990 ntBASIC1.28□□□□□ -2.2
APOBP04114 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
APOBP04114 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC1.28□□□□□ -2.2
APOBP04114 AC010680.1-201ENST00000590024 3590 ntBASIC1.28□□□□□ -2.2
APOBP04114 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
APOBP04114 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
APOBP04114 HMGB1P31-201ENST00000437242 427 ntBASIC1.28□□□□□ -2.2
APOBP04114 RPL23AP16-201ENST00000441715 421 ntBASIC1.28□□□□□ -2.2
APOBP04114 HIGD1AP10-201ENST00000527837 282 ntBASIC1.28□□□□□ -2.2
APOBP04114 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
APOBP04114 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
APOBP04114 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
APOBP04114 DYNLT3P1-201ENST00000378574 347 ntBASIC1.28□□□□□ -2.2
APOBP04114 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.28□□□□□ -2.2
APOBP04114 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.28□□□□□ -2.2
APOBP04114 MTATP6P11-201ENST00000428071 670 ntBASIC1.28□□□□□ -2.2
APOBP04114 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.28□□□□□ -2.2
APOBP04114 SUB1P3-201ENST00000564581 315 ntBASIC1.28□□□□□ -2.2
APOBP04114 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.28□□□□□ -2.2
APOBP04114 HMGB1P10-201ENST00000395823 563 ntBASIC1.28□□□□□ -2.21
APOBP04114 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.28□□□□□ -2.21
APOBP04114 AC009969.1-201ENST00000438726 172 ntBASIC1.28□□□□□ -2.21
APOBP04114 DNAJC19P4-201ENST00000440115 345 ntBASIC1.28□□□□□ -2.21
APOBP04114 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC1.28□□□□□ -2.21
APOBP04114 RNA5SP385-201ENST00000515947 110 ntBASIC1.28□□□□□ -2.21
APOBP04114 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.28□□□□□ -2.21
APOBP04114 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC1.28□□□□□ -2.21
APOBP04114 AL160237.3-201ENST00000604114 1013 ntBASIC1.28□□□□□ -2.21
APOBP04114 AF127577.6-201ENST00000623352 2191 ntBASIC1.28□□□□□ -2.21
APOBP04114 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
APOBP04114 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC1.28□□□□□ -2.21
APOBP04114 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 SNORA68.2-201ENST00000391263 128 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC004965.1-201ENST00000413033 213 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC004486.1-201ENST00000546846 233 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC126177.3-201ENST00000551839 688 ntBASIC1.27□□□□□ -2.21
APOBP04114 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.27□□□□□ -2.21
APOBP04114 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 AC131238.1-201ENST00000617135 328 ntBASIC1.27□□□□□ -2.21
APOBP04114 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 WWP1P1-201ENST00000466609 2769 ntBASIC1.27□□□□□ -2.21
APOBP04114 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
APOBP04114 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
APOBP04114 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
APOBP04114 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 RPS29P12-201ENST00000460178 152 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 AC012119.1-201ENST00000603184 222 ntBASIC1.27□□□□□ -2.21
APOBP04114 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.27□□□□□ -2.21
APOBP04114 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 EXTL2P1-201ENST00000446218 416 ntBASIC1.27□□□□□ -2.21
APOBP04114 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC1.27□□□□□ -2.21
APOBP04114 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 Y_RNA.327-201ENST00000365201 102 ntBASIC1.27□□□□□ -2.21
APOBP04114 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.27□□□□□ -2.21
APOBP04114 NDUFB4P6-201ENST00000436819 366 ntBASIC1.27□□□□□ -2.21
APOBP04114 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 RPL9P33-201ENST00000484311 566 ntBASIC1.27□□□□□ -2.21
APOBP04114 RPL23AP63-201ENST00000498752 471 ntBASIC1.27□□□□□ -2.21
APOBP04114 RNU6-250P-201ENST00000516958 103 ntBASIC1.27□□□□□ -2.21
APOBP04114 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC1.27□□□□□ -2.21
APOBP04114 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.27□□□□□ -2.21
APOBP04114 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.26□□□□□ -2.21
APOBP04114 ZNF542P-204ENST00000482727 1305 ntBASIC1.26□□□□□ -2.21
APOBP04114 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
APOBP04114 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
APOBP04114 SET-203ENST00000372688 801 ntTSL 2 BASIC1.26□□□□□ -2.21
APOBP04114 EI24P1-201ENST00000416584 867 ntBASIC1.26□□□□□ -2.21
APOBP04114 AC093151.1-201ENST00000427711 313 ntBASIC1.26□□□□□ -2.21
APOBP04114 RPS7P5-201ENST00000441482 581 ntBASIC1.26□□□□□ -2.21
APOBP04114 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.26□□□□□ -2.21
APOBP04114 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.26□□□□□ -2.21
APOBP04114 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
APOBP04114 AL139286.1-201ENST00000604465 483 ntBASIC1.26□□□□□ -2.21
APOBP04114 AC108479.2-201ENST00000617314 601 ntBASIC1.26□□□□□ -2.21
APOBP04114 MIR6766-201ENST00000622641 72 ntBASIC1.26□□□□□ -2.21
APOBP04114 AP006248.2-201ENST00000623309 592 ntBASIC1.26□□□□□ -2.21
APOBP04114 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.26□□□□□ -2.21
APOBP04114 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
APOBP04114 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.26□□□□□ -2.21
APOBP04114 GZMAP1-201ENST00000503054 631 ntBASIC1.26□□□□□ -2.21
APOBP04114 LTV1P1-201ENST00000510683 1237 ntBASIC1.26□□□□□ -2.21
APOBP04114 AP000889.2-201ENST00000532684 490 ntBASIC1.26□□□□□ -2.21
APOBP04114 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms