Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 RNU6-718P-201ENST00000516166 105 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AP004247.1-201ENST00000531556 1289 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC013828.2-201ENST00000532487 235 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 RPS3AP4-201ENST00000555161 764 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC068446.3-201ENST00000555285 382 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC008739.3-201ENST00000603262 127 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC024220.1-201ENST00000603675 484 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC104662.1-201ENST00000604448 511 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL161729.4-201ENST00000604650 476 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL022154.1-201ENST00000604698 785 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL451044.1-201ENST00000604867 238 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AP001596.2-201ENST00000608410 312 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL359535.1-201ENST00000612100 1087 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC099669.2-201ENST00000616549 437 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.54□□□□□ -1.84
LMX1BO60663 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.54□□□□□ -1.84
LMX1BO60663 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC116667.1-201ENST00000604855 2072 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC006378.2-201ENST00000623178 2476 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 RLIMP1-201ENST00000339626 1680 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
LMX1BO60663 Y_RNA.303-201ENST00000364998 94 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 RNU6-769P-201ENST00000384407 104 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 RNU6-952P-201ENST00000391164 108 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 ARF4P3-201ENST00000397387 509 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 DHFRP6-201ENST00000401776 268 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 USP9YP13-201ENST00000417797 480 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 CYP4F29P-201ENST00000420685 446 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AL391219.1-201ENST00000422570 483 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 BX890604.2-201ENST00000427883 474 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 NPM1P24-201ENST00000428039 894 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 RPS29P7-201ENST00000439662 171 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 ELOCP10-201ENST00000440624 327 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AL671855.1-201ENST00000446875 1203 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 MTCO1P48-201ENST00000448024 1096 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 RPL36AP13-201ENST00000457490 317 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 RPS15AP17-201ENST00000470598 390 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AP000893.1-201ENST00000474462 794 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 TMEM251P1-201ENST00000503717 318 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.53□□□□□ -1.84
LMX1BO60663 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 AC022483.1-201ENST00000514020 567 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 OR4A12P-201ENST00000530847 918 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.53□□□□□ -1.84
LMX1BO60663 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.53□□□□□ -1.84
LMX1BO60663 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.53□□□□□ -1.84
LMX1BO60663 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 GNRHR2P1-201ENST00000555315 631 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 MIR3944-201ENST00000581277 108 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AP001180.3-201ENST00000582221 145 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 MIR4637-201ENST00000582405 84 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.53□□□□□ -1.84
LMX1BO60663 PSMA6P4-201ENST00000603247 718 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC112187.2-201ENST00000604345 283 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 ELOCP34-201ENST00000604436 327 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC090578.1-201ENST00000604955 591 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC091965.4-201ENST00000607691 587 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC092954.2-201ENST00000609103 430 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC072046.2-201ENST00000618366 268 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AP005264.7-201ENST00000625003 745 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AC112200.1-201ENST00000625015 234 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 AL157786.1-207ENST00000627771 695 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.53□□□□□ -1.84
LMX1BO60663 FAM157B-203ENST00000639350 358 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LMX1BO60663 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.53□□□□□ -1.84
LMX1BO60663 AC107081.3-201ENST00000612715 2034 ntBASIC3.53□□□□□ -1.84
LMX1BO60663 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
LMX1BO60663 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LMX1BO60663 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LMX1BO60663 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms