Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 SNORA62.6-201ENST00000606322 83 ntBASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 AC005183.1-201ENST00000603687 1979 ntBASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.59□□□□□ -1.83
PCDHGA1Q9Y5H4 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 SGO1P2-201ENST00000429458 1589 ntBASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 AC097714.1-201ENST00000511272 1647 ntBASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.59□□□□□ -1.84
PCDHGA1Q9Y5H4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 SNRPEP3-201ENST00000338402 276 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 RPL7P60-201ENST00000397636 735 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 USP9YP11-201ENST00000427537 717 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC005019.1-201ENST00000436455 431 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 HMGN2P20-201ENST00000437531 273 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC006480.1-201ENST00000449887 378 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 NECAP1P2-201ENST00000455668 727 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC096751.1-202ENST00000502691 1067 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC020699.1-201ENST00000505161 445 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL391156.1-201ENST00000554965 554 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AGGF1P5-201ENST00000567900 919 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 MIR4474-201ENST00000579189 78 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC022662.1-201ENST00000580252 331 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC245036.5-201ENST00000596330 847 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL391001.1-201ENST00000602747 715 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC128687.2-201ENST00000609657 566 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC109809.1-201ENST00000619665 545 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL356585.4-201ENST00000623078 1229 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL773545.4-201ENST00000637262 310 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AC119674.1-207ENST00000641355 633 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 AL513478.4-201ENST00000641636 310 ntBASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA1Q9Y5H4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 Y_RNA.465-201ENST00000384293 102 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 MIR490-201ENST00000384865 128 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 U3.19-201ENST00000390893 196 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SNRPEP2-201ENST00000397592 279 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 RNA5SP120-201ENST00000410900 112 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AC068533.2-201ENST00000411872 306 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AL137014.1-201ENST00000420490 1226 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 PSMA6P3-201ENST00000428242 164 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 CR769776.1-201ENST00000441254 787 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 TPTE2P3-201ENST00000441562 1189 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 PTENP1-201ENST00000447117 1215 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SSXP4-201ENST00000451349 245 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SNORD11.1-201ENST00000459482 85 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 OR4G11P-201ENST00000492842 939 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 HMGB1P28-201ENST00000507778 552 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SETP7-201ENST00000552169 453 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 GNRHR2P1-201ENST00000555315 631 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 LARP7P2-201ENST00000575306 125 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms