Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RN7SKP70-201ENST00000516655 271 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-323P-201ENST00000521915 107 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC022616.4-201ENST00000522985 181 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 SETP7-201ENST00000552169 453 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC090115.3-201ENST00000553218 849 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC107958.1-201ENST00000556576 290 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC006254.3-201ENST00000603353 884 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 MTND4LP5-201ENST00000605152 292 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AL591926.1-201ENST00000620542 217 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AP001784.1-201ENST00000624107 428 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 GABPAP-201ENST00000419271 1356 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 ZNF72P-201ENST00000425869 1908 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC140134.1-201ENST00000511830 3544 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-95P-201ENST00000384697 107 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 SNORD70.1-201ENST00000391007 85 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AL445529.1-201ENST00000398713 389 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AL109755.1-201ENST00000401791 649 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 RNA5SP431-201ENST00000410312 120 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 Z99755.1-201ENST00000414048 380 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 MRPL53P1-201ENST00000414323 319 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC138761.5-201ENST00000433967 325 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC011816.1-201ENST00000441346 546 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC104339.1-201ENST00000465478 348 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC117503.1-201ENST00000472241 394 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 HMGB1P35-201ENST00000503360 598 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC105758.1-201ENST00000506038 399 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-138P-201ENST00000515952 107 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.673-201ENST00000516306 88 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 HMGN1P28-201ENST00000521340 364 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 HSPE1P20-201ENST00000538133 289 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 MIR4271-201ENST00000582451 67 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 MIR3941-201ENST00000582572 103 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC011494.1-201ENST00000596454 237 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 AC007529.1-201ENST00000418574 2178 ntBASIC5.14□□□□□ -1.59
HIF3AQ9Y2N7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 AC006484.1-201ENST00000435086 1884 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 IQCB2P-201ENST00000401788 1633 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.14-201ENST00000362415 103 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 RNU1-150P-201ENST00000362491 162 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-1284P-201ENST00000363701 100 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.314-201ENST00000365114 102 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-178P-201ENST00000384631 104 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 SNORA16.2-201ENST00000390991 127 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-754P-201ENST00000391166 107 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 U3.25-201ENST00000391209 220 ntBASIC5.13□□□□□ -1.59
HIF3AQ9Y2N7 ENSAP1-201ENST00000392855 326 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms