Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 RLIMP1-201ENST00000339626 1680 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC025750.1-201ENST00000399891 379 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 SKINT1L-201ENST00000401057 817 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL583834.1-201ENST00000406943 343 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 MTATP6P27-201ENST00000416987 621 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC019178.2-201ENST00000423595 505 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL691449.1-201ENST00000426570 421 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC118469.1-201ENST00000442943 488 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 RPL5P32-201ENST00000454085 879 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 snoU13.3-201ENST00000459441 104 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC017015.1-201ENST00000477387 286 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 FAM172BP-201ENST00000487497 1089 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC110792.1-201ENST00000491826 472 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC023141.12-201ENST00000512399 199 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC117532.1-201ENST00000514638 323 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 OR6C7P-201ENST00000547875 934 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC023161.2-201ENST00000551218 780 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 BNIP3P5-201ENST00000562290 498 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 MIR1254-2-201ENST00000579553 63 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC112230.1-201ENST00000604342 547 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 MIR6867-201ENST00000610636 67 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 MIR6875-201ENST00000617506 72 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 AC018755.4-201ENST00000619715 454 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 U7.8-201ENST00000619968 63 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AL513185.3-201ENST00000433335 1300 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 AP002001.2-201ENST00000529025 1469 ntBASIC3.32□□□□□ -1.88
NKX3-1Q99801 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.32□□□□□ -1.88
NKX3-1Q99801 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-1Q99801 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 FAM91A3P-201ENST00000456826 2544 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL133383.2-201ENST00000622958 2336 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 MTND5P3-201ENST00000438536 1800 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 CR383658.2-201ENST00000547576 1525 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL356473.1-201ENST00000406203 1408 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 MIR1250-201ENST00000408098 113 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 MIR320C1-201ENST00000408566 88 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 HMGB1P11-201ENST00000413899 637 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 RPL23AP39-201ENST00000415533 405 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 NPM1P11-201ENST00000417106 855 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 MTCO2P5-201ENST00000422621 426 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 MRPS18BP2-201ENST00000434310 759 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-1Q99801 UBE2FP3-201ENST00000436366 524 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 MTND4P32-201ENST00000437189 1237 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 AC073387.1-201ENST00000453261 709 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-1Q99801 MTCO3P20-201ENST00000454926 688 ntBASIC3.31□□□□□ -1.88
NKX3-1Q99801 SUMO2P2-201ENST00000456482 255 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms