Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC010153.1-201ENST00000432862 727 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 MTCO3P5-201ENST00000433620 714 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 LARP1BP3-201ENST00000437229 869 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL360221.1-201ENST00000445989 335 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 FABP3P2-201ENST00000453169 399 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 ZNF114P1-201ENST00000453500 292 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 U8.18-201ENST00000459285 133 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 MEMO1P3-201ENST00000459811 302 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 RPL37P6-202ENST00000464216 403 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 PABPC1P3-201ENST00000469174 459 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 RPL7P49-201ENST00000471402 708 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC106872.2-201ENST00000494303 480 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC090453.1-201ENST00000495560 436 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 RNU1-95P-201ENST00000516357 160 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 RNU1-128P-201ENST00000516704 160 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 RN7SKP277-201ENST00000516895 283 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 IGKV2D-23-201ENST00000518179 286 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL049634.3-201ENST00000604968 457 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC080013.4-201ENST00000607624 649 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC092140.2-201ENST00000618027 521 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AL356266.1-201ENST00000623311 483 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 MTCO1P23-201ENST00000415223 1526 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AP002001.2-201ENST00000529025 1469 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 AC027287.1-201ENST00000553115 1453 ntBASIC4.24□□□□□ -1.73
VPS52Q8N1B4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS52Q8N1B4 GDI2P1-201ENST00000429312 1336 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 CR383658.2-201ENST00000547576 1525 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 RPL23AP57-201ENST00000332361 466 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 Y_RNA.436-201ENST00000384097 102 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 DHFRP6-201ENST00000401776 268 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 TPMTP2-201ENST00000414372 726 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL512286.1-201ENST00000439244 400 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 TRIM60P18-201ENST00000441518 828 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 MTCO2P7-201ENST00000446518 666 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 BX276092.4-201ENST00000452056 248 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 NANOGP10-201ENST00000453325 895 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AP001086.1-201ENST00000494882 321 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC093809.1-201ENST00000509155 340 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 IGKV2-38-201ENST00000517443 247 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 YPEL5P3-201ENST00000547227 352 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC007599.1-201ENST00000568688 1174 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 MAGOH2P-202ENST00000584384 429 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LLPHP1-201ENST00000603571 367 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 RPL23AP92-201ENST00000603609 255 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC104662.1-201ENST00000604448 511 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL159169.3-201ENST00000608871 561 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC005344.1-201ENST00000613391 459 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AC009318.4-201ENST00000620496 486 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 CYP3A51P-201ENST00000633513 256 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AL034408.1-202ENST00000636088 415 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS52Q8N1B4 AP004289.2-201ENST00000444413 1457 ntBASIC4.23□□□□□ -1.73
VPS52Q8N1B4 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS52Q8N1B4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms