Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA3P55318 U3.37-201ENST00000408528 213 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 RPL7P37-201ENST00000425095 738 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 GCA-203ENST00000429691 824 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 AL513175.1-201ENST00000431492 780 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 RAB6C-AS1-202ENST00000433431 123 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA3P55318 RPL7P29-201ENST00000437151 728 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 AL591503.2-201ENST00000442314 1005 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 HMGB1P5-202ENST00000451497 985 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC025768.1-201ENST00000510057 267 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC092593.2-201ENST00000513866 913 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 RN7SKP57-201ENST00000517248 293 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 PRELID2P1-201ENST00000552837 301 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 MIR4504-201ENST00000577413 92 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC009303.3-201ENST00000591103 736 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AC128687.1-201ENST00000605304 619 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC110792.4-201ENST00000609843 298 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC1.93□□□□□ -2.1
FOXA3P55318 AC110079.1-202ENST00000635213 138 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 ABBA01000935.2-201ENST00000637477 838 ntBASIC1.93□□□□□ -2.1
FOXA3P55318 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC1.93□□□□□ -2.1
FOXA3P55318 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA3P55318 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA3P55318 POMP-202ENST00000460403 1428 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
FOXA3P55318 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA3P55318 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA3P55318 MIR144-201ENST00000384886 86 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 MIR183-201ENST00000384958 110 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 ERMN-204ENST00000409925 556 ntTSL 4 BASIC1.92□□□□□ -2.1
FOXA3P55318 RNA5SP120-201ENST00000410900 112 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC007064.1-201ENST00000412238 351 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 USP9YP27-201ENST00000418455 438 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 USP9YP20-201ENST00000419224 558 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AJ239321.1-201ENST00000424255 564 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA3P55318 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA3P55318 RPS15AP7-201ENST00000439294 405 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC011753.1-201ENST00000451001 220 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC107222.1-201ENST00000510899 637 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 MTCO3P44-201ENST00000510977 541 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 SAP18P1-201ENST00000512058 390 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 SNORA31.8-201ENST00000516327 108 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 DUXAP2-201ENST00000519198 589 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 SUB1P1-201ENST00000524415 382 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 OR4V1P-201ENST00000525394 1140 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AP000790.1-201ENST00000528891 737 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC087241.2-201ENST00000535801 324 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AC007954.1-201ENST00000554198 494 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC012493.2-201ENST00000595083 291 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC008687.2-201ENST00000597865 520 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AL020997.2-201ENST00000602607 184 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 ELOCP35-201ENST00000604289 336 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 BNIP3P7-201ENST00000605641 516 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 AC011890.2-201ENST00000613393 294 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 AC015967.1-201ENST00000619893 476 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA3P55318 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA3P55318 AC007342.9-201ENST00000623877 1385 ntBASIC1.92□□□□□ -2.1
FOXA3P55318 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA3P55318 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC1.91□□□□□ -2.1
FOXA3P55318 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 RNA5SP258-201ENST00000362750 119 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 RNU6-670P-201ENST00000364312 104 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 RNU1-112P-201ENST00000364401 164 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 SET-203ENST00000372688 801 ntTSL 2 BASIC1.91□□□□□ -2.1
FOXA3P55318 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 OR52E6-202ENST00000379946 954 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 SNORA80E-201ENST00000384744 137 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms