Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR181B1-201ENST00000385240 110 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 RNU6-482P-201ENST00000391068 107 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 CR769776.1-201ENST00000441254 787 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A4P53420 AL031313.1-201ENST00000448435 256 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 RAP1BP2-201ENST00000478270 544 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC004263.1-201ENST00000479327 332 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.98□□□□□ -1.93
COL4A4P53420 KCTD9P5-201ENST00000504141 1170 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC018797.3-201ENST00000513388 1241 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 RNA5SP445-201ENST00000515889 115 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A4P53420 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 AL109653.1-201ENST00000603091 248 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC080078.2-201ENST00000603766 501 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 HULC.1-201ENST00000612720 240 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC078880.5-201ENST00000617845 421 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC007342.7-201ENST00000624610 2337 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC090582.1-201ENST00000636321 199 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A4P53420 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL4A4P53420 Y_RNA.118-201ENST00000363300 101 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 RNA5SP68-201ENST00000363885 119 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 Y_RNA.466-201ENST00000384294 113 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AL360182.1-201ENST00000397433 468 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL4A4P53420 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.97□□□□□ -1.93
COL4A4P53420 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 MTND4P24-201ENST00000424002 397 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 RPL23AP4-201ENST00000427757 463 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A4P53420 AL662791.1-201ENST00000441992 928 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A4P53420 RPL7L1P1-201ENST00000448259 785 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A4P53420 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A4P53420 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 MTCYBP14-201ENST00000457471 715 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 RN7SKP283-201ENST00000517197 270 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 AC087373.1-201ENST00000524920 491 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 AC090888.1-201ENST00000561335 1141 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AC023825.1-201ENST00000566704 1030 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 DEFB122-202ENST00000569013 197 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 NBR2-204ENST00000587322 63 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC2.97□□□□□ -1.93
COL4A4P53420 AL022067.1-201ENST00000602426 454 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 NTAN1P1-201ENST00000603150 646 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AC025588.2-201ENST00000604851 466 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 RNU6-1192P-201ENST00000612197 107 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 MIR1264-201ENST00000616374 69 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 RNU6-489P-201ENST00000618289 107 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 AC092184.1-201ENST00000625042 715 ntBASIC2.97□□□□□ -1.93
COL4A4P53420 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL4A4P53420 AC008725.1-201ENST00000605123 2263 ntBASIC2.96□□□□□ -1.93
COL4A4P53420 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.93
COL4A4P53420 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.96□□□□□ -1.93
COL4A4P53420 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A4P53420 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.96□□□□□ -1.94
COL4A4P53420 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
COL4A4P53420 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
COL4A4P53420 RNU6-249P-201ENST00000363016 102 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
COL4A4P53420 Y_RNA.619-201ENST00000410951 90 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 RPL22P18-201ENST00000417197 377 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 PTP4A1P7-201ENST00000423476 514 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.96□□□□□ -1.94
COL4A4P53420 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.96□□□□□ -1.94
COL4A4P53420 UBE2D3P4-201ENST00000441973 436 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 RPL29P29-201ENST00000448725 423 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AP001025.2-201ENST00000490908 477 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC134050.1-201ENST00000495088 933 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 NIPA2P2-201ENST00000496376 1083 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 RNU5A-7P-201ENST00000515979 116 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 RNA5SP148-201ENST00000516527 94 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 RNU6-889P-201ENST00000517189 103 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 MRPS36P3-201ENST00000519284 130 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC104997.1-201ENST00000519761 717 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.96□□□□□ -1.94
COL4A4P53420 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A4P53420 AL358913.1-201ENST00000554342 121 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC090666.1-201ENST00000578241 445 ntBASIC2.96□□□□□ -1.94
COL4A4P53420 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms