Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC016957.1-201ENST00000534895 309 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC069240.1-201ENST00000548774 375 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.72□□□□□ -1.65
SMARCA1P28370 RPL23AP87-202ENST00000573039 466 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.72□□□□□ -1.65
SMARCA1P28370 BBIP1P1-201ENST00000602999 279 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AL513477.2-201ENST00000607858 568 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC068831.8-201ENST00000620171 435 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC095050.2-201ENST00000510748 1458 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC005832.2-201ENST00000538921 1430 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
SMARCA1P28370 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.71□□□□□ -1.65
SMARCA1P28370 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMARCA1P28370 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC097504.1-201ENST00000515103 2415 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 Y_RNA.6-201ENST00000362350 114 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 RNA5SP388-201ENST00000362584 119 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 RNU6-1042P-201ENST00000384204 107 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AIMP1P1-201ENST00000418670 937 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 RPL7P36-201ENST00000444633 681 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AP000542.1-201ENST00000448473 371 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AL033528.1-201ENST00000453780 140 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 SNRPFP4-201ENST00000456366 242 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.71□□□□□ -1.66
SMARCA1P28370 RPL23AP2-201ENST00000471227 466 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC138853.1-201ENST00000503549 823 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 MTCO1P35-201ENST00000515270 228 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 RN7SKP298-201ENST00000515950 94 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 IGLVIV-53-201ENST00000520107 367 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC022878.1-201ENST00000530684 149 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMARCA1P28370 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 MIR3160-1-201ENST00000577972 85 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 BNIP3P8-201ENST00000597863 560 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC112191.3-201ENST00000604371 277 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC104662.1-201ENST00000604448 511 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 RNA5SP108-201ENST00000605921 117 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC004009.2-201ENST00000623016 728 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.71□□□□□ -1.66
SMARCA1P28370 AC068137.3-201ENST00000639191 341 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 AC073869.6-201ENST00000640656 341 ntBASIC4.71□□□□□ -1.66
SMARCA1P28370 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMARCA1P28370 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMARCA1P28370 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SMARCA1P28370 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SMARCA1P28370 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.7□□□□□ -1.66
SMARCA1P28370 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SMARCA1P28370 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SMARCA1P28370 RNU6-259P-201ENST00000383999 107 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 MIR124-3-201ENST00000384866 87 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 PPIAP31-201ENST00000405422 495 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.7□□□□□ -1.66
SMARCA1P28370 HMGB3P23-201ENST00000414981 585 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 RAD23BP2-201ENST00000416003 1207 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 Z97055.1-201ENST00000419730 712 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.7□□□□□ -1.66
SMARCA1P28370 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.7□□□□□ -1.66
SMARCA1P28370 AL590399.6-201ENST00000446396 307 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 NANOGNBP1-201ENST00000448444 480 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.7□□□□□ -1.66
SMARCA1P28370 FABP3P2-201ENST00000453169 399 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.7□□□□□ -1.66
SMARCA1P28370 KLF3P2-201ENST00000465138 268 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC022034.3-201ENST00000471393 478 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AL132838.2-201ENST00000492041 314 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.7□□□□□ -1.66
SMARCA1P28370 TMEM248P1-201ENST00000510579 951 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 PTGES3P3-201ENST00000511479 482 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC005798.1-201ENST00000513715 387 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.7□□□□□ -1.66
SMARCA1P28370 AC091516.1-201ENST00000549191 703 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.7□□□□□ -1.66
SMARCA1P28370 ZNF519P3-201ENST00000557158 1032 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC022968.1-201ENST00000567372 442 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC025627.2-201ENST00000576220 160 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms